View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_high_11 (Length: 242)
Name: NF4777_high_11
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 218826 - 218614
Alignment:
| Q |
14 |
aggtaccgcaccatttgctactataagatcaaggtgatattcacctgaaaaaataaaataagatttagtaacataattagcaacatttctatatgttgct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218826 |
aggtaccgcaccatttgctactataagatcaaggtgatattcacctgaaaaaataaaataagatttagtaacataattagcaacatttctatatgttgct |
218727 |
T |
|
| Q |
114 |
agggaaattaattaaacttttcnnnnnnntttcacataattcaatattttgaacatcctgaattgaattgaattaaactaacttaccgacgaaatcgacg |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
218726 |
agggaaattaattaaacttttcaaaaaaatttcacataattcaatattttgaacatcctgaattgaattgaattaaactaacttaccgacgaaatcgacg |
218627 |
T |
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| Q |
214 |
aacttgttcttac |
226 |
Q |
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||||||||||||| |
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| T |
218626 |
aacttgttcttac |
218614 |
T |
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