View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_high_13 (Length: 238)
Name: NF4777_high_13
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 7570947 - 7570794
Alignment:
| Q |
69 |
aacacacaagaattatgataaatgtacctgtggagggattcccatttctagaaagagtggccccaaaatgaagccacctcctagaccaagcaaccctcca |
168 |
Q |
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| T |
7570947 |
aacacacaagaattacgaagaatgtacctgcggaggaattcccatttctagaaagagtggccccaaaatgaagccacctcctagaccaagcaaccctcca |
7570848 |
T |
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| Q |
169 |
accataccagctattattccacacaaacaatatagcaaaatttgatgaatcttc |
222 |
Q |
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| T |
7570847 |
accataccagctattactccaattgaacaatatagcaatatttgataaatcttc |
7570794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 33124094 - 33124194
Alignment:
| Q |
91 |
tgtacctgtggagggattcccatttctagaaagagtggccccaaaatgaagccacctcctagaccaagcaaccctccaaccataccagctattattccac |
190 |
Q |
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|||||||| ||||| ||||||| ||| | ||| | ||| ||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||| |
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| T |
33124094 |
tgtacctgaggaggaattcccaattccaaaaacaatggtcccaaaatgaagccaccacctagaccaagcaaaccactaaccataccagctattattccac |
33124193 |
T |
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| Q |
191 |
a |
191 |
Q |
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| T |
33124194 |
a |
33124194 |
T |
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