View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4777_high_16 (Length: 223)

Name: NF4777_high_16
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4777_high_16
NF4777_high_16
[»] chr3 (4 HSPs)
chr3 (15-182)||(37776901-37777068)
chr3 (46-156)||(45779541-45779651)
chr3 (25-98)||(8087922-8087995)
chr3 (46-126)||(53581124-53581204)
[»] chr1 (2 HSPs)
chr1 (25-178)||(20491269-20491422)
chr1 (46-103)||(5212891-5212948)
[»] chr7 (5 HSPs)
chr7 (16-163)||(47294859-47295005)
chr7 (46-163)||(11567743-11567860)
chr7 (46-163)||(18807264-18807381)
chr7 (46-162)||(23834624-23834740)
chr7 (80-112)||(24789108-24789140)
[»] chr4 (3 HSPs)
chr4 (25-176)||(17778040-17778191)
chr4 (46-163)||(53708350-53708467)
chr4 (25-98)||(32663459-32663532)
[»] chr2 (7 HSPs)
chr2 (25-176)||(27634909-27635060)
chr2 (46-163)||(13911832-13911949)
chr2 (57-163)||(26510257-26510363)
chr2 (33-98)||(10943998-10944063)
chr2 (33-98)||(10949867-10949932)
chr2 (25-98)||(26370228-26370300)
chr2 (46-163)||(43680016-43680132)
[»] chr6 (1 HSPs)
chr6 (46-163)||(19110532-19110649)
[»] chr8 (2 HSPs)
chr8 (46-163)||(26381512-26381629)
chr8 (118-178)||(10543823-10543883)
[»] scaffold0250 (1 HSPs)
scaffold0250 (25-97)||(21416-21488)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 37777068 - 37776901
Alignment:
Q  15 cagagacaatcatggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  37777068 cagagacaatcatggtgcttttctccttgtcaaaactgagtagtttagtccaatctatgaagtatgtattggagaagctcttggtttattttcagcgttg 37776969  T
Q  115 gattgggttcatgggcttaatctaggacctatcgattttgagctggatgtaaagagagtggttggtag 182  Q
    |||||||||||||  ||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37776968 gattgggttcatgatcttgatctgggacctatcgattttgagctggatgtaaagagagtggttggtag 37776901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 45779541 - 45779651
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||| || ||  | || |||||||| | | ||||||| || ||||    
T  45779541 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttggtttattatctgctctagaatgggttcacgagtttaatcttggtccta 45779640  T
Q  146 tcgattttgag 156  Q
    | |||||||||    
T  45779641 tggattttgag 45779651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 8087922 - 8087995
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttgg 98  Q
    |||||| ||||| |||||| ||||| ||| | | ||||||| || |||||||| ||||||||||||||||||||    
T  8087922 catggtacttttgtccttgccaaaattgattgggttagtcccatatgtgaagttcatattggagaagctcttgg 8087995  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 53581124 - 53581204
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcat 126  Q
    |||||||| | ||||| || | ||||||| |||||| |||| ||||||||||| || || ||||| ||||| |||||||||    
T  53581124 aaaactgaatggtttactctagtctgtgaggtacatgttggtgaagctcttggattgttatcagctttggaatgggttcat 53581204  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 20491269 - 20491422
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttc 124  Q
    |||||| ||||| |||||| ||||||||| | ||||||||| || |||||||| |||||||||||||||||||| ||  |||||||  | || ||||| |    
T  20491269 catggtacttttgtccttgccaaaactgattggtttagtcccatatgtgaagttcatattggagaagctcttgggttgatttcagcactagagtgggtgc 20491368  T
Q  125 atgggcttaatctaggacctatcgattttgagctggatgtaaagagagtggttg 178  Q
     || ||| ||| | |||||||| || |||||| ||||||  |||||||||||||    
T  20491369 gtgagctcaatttgggacctattgactttgagatggatgcgaagagagtggttg 20491422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 5212891 - 5212948
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttat 103  Q
    |||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||    
T  5212891 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttggtttat 5212948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 47294859 - 47295005
Alignment:
Q  16 agagacaatcatggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttgg 115  Q
    |||||||| ||| ||| |||| ||||||  |||||| ||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||| | | ||    
T  47294859 agagacaaacatagtg-ttttgtccttgcaaaaacttagtggtttagtccaatttgtgaagtacatattgaagaagctcttagtttattttcaacttagg 47294957  T
Q  116 attgggttcatgggcttaatctaggacctatcgattttgagctggatg 163  Q
    | || |||||||  |||||| | ||| |||| || |||||| ||||||    
T  47294958 aatgagttcatgaacttaatttgggatctattgactttgagttggatg 47295005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 11567860 - 11567743
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||| || ||  | || |||||||| | ||||||||| || ||||    
T  11567860 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttggtttattatctgctctagaatgggttcacgagcttaatcttggtccta 11567761  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  11567760 tggattttgagatggatg 11567743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 18807264 - 18807381
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | |||||||||  | |||||||| ||||| |||||||||||||||||||| || || || || |||||||| | |||||| || || ||||    
T  18807264 aaaactgaatggtttagtccgttatgtgaagttcatataggagaagctcttggtttattatccgctttagaatgggttcacgagcttaaccttggtccta 18807363  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  18807364 tggattttgagatggatg 18807381  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 23834624 - 23834740
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| |||||  || |||||||||||||||| || ||  | || |||||||| | ||||||||| || ||||    
T  23834624 aaaactgaatggtttagtccgatatgtgaagttcatatacgaaaagctcttggtttattatctgctctagaatgggttcacgagcttaatcttggtccta 23834723  T
Q  146 tcgattttgagctggat 162  Q
    |  |||||||| |||||    
T  23834724 tgaattttgagatggat 23834740  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 24789108 - 24789140
Alignment:
Q  80 atattggagaagctcttggtttattttcagcgt 112  Q
    ||||||||||||||||||||||||| |||||||    
T  24789108 atattggagaagctcttggtttattctcagcgt 24789140  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 17778191 - 17778040
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttc 124  Q
    |||||| ||||| |||||| ||||||||| | ||||||||| || |||||||| |||||||||||||||||||| ||  |||||||  | || ||||| |    
T  17778191 catggtacttttgtccttgccaaaactgattggtttagtcccatatgtgaagttcatattggagaagctcttgggttgatttcagcactagagtgggtgc 17778092  T
Q  125 atgggcttaatctaggacctatcgattttgagctggatgtaaagagagtggt 176  Q
    ||| ||| ||  | |||||||| || |||||| ||||||  |||||||||||    
T  17778091 atgagctcaacttgggacctattgactttgagatggatgcgaagagagtggt 17778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 53708467 - 53708350
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||| || ||  |  | |||||||| | ||||||||| || ||||    
T  53708467 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttggtttattatctgctctacaatgggttcacgagcttaatcttggtccta 53708368  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  53708367 tggattttgagatggatg 53708350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 32663459 - 32663532
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttgg 98  Q
    |||||| ||||| |||||  ||||||||| | ||||||||| || |||||||| ||||||||||||||| ||||    
T  32663459 catggtacttttgtccttaccaaaactgattggtttagtcccatatgtgaagttcatattggagaagcttttgg 32663532  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 27634909 - 27635060
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttc 124  Q
    |||||| ||||| |||||| ||||||||| | ||||||||| || |||||||| ||||||| |||||||||||| ||  |||||||  | || ||||| |    
T  27634909 catggtacttttgtccttgccaaaactgattggtttagtcccatatgtgaagttcatattgaagaagctcttgggttgatttcagcactagagtgggtgc 27635008  T
Q  125 atgggcttaatctaggacctatcgattttgagctggatgtaaagagagtggt 176  Q
    ||| ||| ||  | |||||||| || |||||| ||||||| |||||||||||    
T  27635009 atgagctcaacttgggacctattgactttgagatggatgtgaagagagtggt 27635060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 13911949 - 13911832
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||| || ||  | || |||||||| | ||||||||| || ||||    
T  13911949 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttggtttattatctgctctagaatgggttcacgagcttaatcttggtccta 13911850  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  13911849 tggattttgagatggatg 13911832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 26510363 - 26510257
Alignment:
Q  57 gtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggacctatcgattttgag 156  Q
    ||||||||| || |||||||| ||||| |||||| ||||||||||||| || ||  | || |||||||| | ||||||||| || | ||| |||||||||    
T  26510363 gtttagtccgatgtgtgaagttcatataggagaaactcttggtttattatctgctctagaatgggttcacgagcttaatcttggtcttatggattttgag 26510264  T
Q  157 ctggatg 163  Q
     ||||||    
T  26510263 atggatg 26510257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 10943998 - 10944063
Alignment:
Q  33 ttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttgg 98  Q
    |||| |||||| ||||||||| | ||||||||  || |||||||| ||||||||||||||||||||    
T  10943998 ttttgtccttgccaaaactgattggtttagtctcatatgtgaagttcatattggagaagctcttgg 10944063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 10949867 - 10949932
Alignment:
Q  33 ttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttgg 98  Q
    |||| |||||| ||||||||| | ||||||||  || |||||||| ||||||||||||||||||||    
T  10949867 ttttgtccttgccaaaactgattggtttagtctcatatgtgaagttcatattggagaagctcttgg 10949932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 26370228 - 26370300
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttgg 98  Q
    |||||| ||||| |||||| ||||||||| | ||||||| | || |||||||| ||||||||||||||||||||    
T  26370228 catggtccttttgtccttgccaaaactgattggtttagttccatatgtgaagt-catattggagaagctcttgg 26370300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 43680016 - 43680132
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||| | || |||||||| ||||  |||||||||||||||||||| |  ||  | || |||||||| | ||||||||| || ||||    
T  43680016 aaaactgaatggtttagttcgatttgtgaagttcataa-ggagaagctcttggtttattatatgctctagaatgggttcacgagcttaatcttggtccta 43680114  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  43680115 tggattttgagatggatg 43680132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 19110649 - 19110532
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| ||||| |||||||||||||||||||| || ||  | || |||||||| | ||||||||| || ||||    
T  19110649 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttggtttattatctgctctagaatgggttcacgagcttaatcttggtccta 19110550  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  19110549 tggattttgagatggatg 19110532  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 26381629 - 26381512
Alignment:
Q  46 aaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttggtttattttcagcgttggattgggttcatgggcttaatctaggaccta 145  Q
    |||||||| | ||||||||| || |||||||| ||||| ||||||||||||| |||||| || ||  | || |||||||| | ||||||||| || ||||    
T  26381629 aaaactgaatggtttagtccgatatgtgaagttcatataggagaagctcttgatttattatctgctctagaatgggttcacgagcttaatcttggtccta 26381530  T
Q  146 tcgattttgagctggatg 163  Q
    | ||||||||| ||||||    
T  26381529 tggattttgagatggatg 26381512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 10543823 - 10543883
Alignment:
Q  118 tgggttcatgggcttaatctaggacctatcgattttgagctggatgtaaagagagtggttg 178  Q
    ||||| |||| ||| || ||||||||||| ||||||||| ||||||  |||||||||||||    
T  10543823 tgggtgcatgagctcaacctaggacctattgattttgagatggatgcgaagagagtggttg 10543883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 21416 - 21488
Alignment:
Q  25 catggtgcttttctccttgtcaaaactgagtagtttagtccaatctgtgaagtacatattggagaagctcttg 97  Q
    |||||| ||||| | |||| ||||||||| | ||||||||| || |||||||| |||||||||||||||||||    
T  21416 catggtacttttgttcttgccaaaactgattggtttagtcccatatgtgaagttcatattggagaagctcttg 21488  T

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