View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_high_3 (Length: 448)
Name: NF4777_high_3
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 430
Target Start/End: Original strand, 16357391 - 16357820
Alignment:
| Q |
7 |
gcagcacagatagcagtcgatcaaagatgacgctagtaatactcccatgacgaaagttgctcctcgaggcgaagtccactatcaacagcacataaatgcc |
106 |
Q |
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| T |
16357391 |
gcagcccagatagcagtcgatcaaagatgacgctagtaatactcccatgacgaaagttgctcctcgaggcgaagtccactatcaacagcacataaatgcc |
16357490 |
T |
|
| Q |
107 |
aagaagaagaataagaaagaattccattttttccatcaggaaaaagatctggtagatcaaagagcgtgtcatcaatatcatcatttgtagtagcagttgt |
206 |
Q |
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| T |
16357491 |
aagaagaataataagaaagaattccattttttccatcaggaaaaagatctggaagatcaaagagtgtgtcatcaatatcatcatttgtagtagcagttgt |
16357590 |
T |
|
| Q |
207 |
agatggagaacttgaattcgactcttgaacattatcaatggaagaaagagttgaaaatgaaa------cttgatcttgatcttgatcttccttaatctcc |
300 |
Q |
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| T |
16357591 |
agatggagaacttgaattagactcttgaacattatcaatggaagaaagagttgaaaatgaaacttgatcttgatcttgatcttgatcttccttaatctcc |
16357690 |
T |
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| Q |
301 |
tcaaacacaattgctgctgcttttgcagctgcaagttgaatgtccttaggtgatgtagtcgaaggcctcggaagattttgagccaaattagggaaattga |
400 |
Q |
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| T |
16357691 |
tcaaatacaatggctgctgcttttgcagctgcaacttgaatgtccttaggtgatgtagtcgaaggcctcggaagattttgagccaaattagggaaattga |
16357790 |
T |
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| Q |
401 |
ggtaagctgaatgaccctttatggctaaag |
430 |
Q |
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| T |
16357791 |
ggtaagctgaatgaccctttatggctaaag |
16357820 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 505505 - 505545
Alignment:
| Q |
390 |
agggaaattgaggtaagctgaatgaccctttatggctaaag |
430 |
Q |
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| T |
505505 |
agggaaattaaggtatgctgaatgaccctttatagctaaag |
505545 |
T |
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