View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_low_15 (Length: 234)
Name: NF4777_low_15
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 886918 - 886713
Alignment:
| Q |
16 |
tctacataaacaaacaaattaaataagttagg------atagtatatgtatgtatgagtggcaacatctatataatattaaatcatttactaactttgag |
109 |
Q |
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| T |
886918 |
tctacataaacaaacaaattaaataattaaggttatgcatagtatatgtatgtatgagtggcaacatctatata---ttaaatcatttactaactttgag |
886822 |
T |
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| Q |
110 |
ggagttaggataggtgtccaactaatctgtgtaggaggtttgggaatgaatttatctccaaagaataagtatcctcctctattttttaagcaatgaccta |
209 |
Q |
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| T |
886821 |
ggaattatgataggtgtccaactaatctgcgtaagaggtttgggaatgaatttatctccaaagaataagtaccctcctctcttttttatgcaatgaccta |
886722 |
T |
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| Q |
210 |
ccacatttt |
218 |
Q |
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| T |
886721 |
ccacatttt |
886713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 188
Target Start/End: Complemental strand, 31660692 - 31660559
Alignment:
| Q |
48 |
atagtatatgtatgtatgagtggcaacatctatataatattaaatcatttactaactttgagggagttaggataggtgtccaactaatctgtgtaggagg |
147 |
Q |
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| T |
31660692 |
atagtatatgtatgtatgagtgacaccatctat-------taaaccatttacttactttgcgggactctgcataggtgtccaactaatctgggtaggagg |
31660600 |
T |
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| Q |
148 |
tttgggaatgaatttatctccaaagaataagtatcctcctc |
188 |
Q |
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| T |
31660599 |
tttgggaatgaagttatctccaaagtataaataacctcctc |
31660559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 31935660 - 31935793
Alignment:
| Q |
48 |
atagtatatgtatgtatgagtggcaacatctatataatattaaatcatttactaactttgagggagttaggataggtgtccaactaatctgtgtaggagg |
147 |
Q |
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| T |
31935660 |
atagtatatgtatgtatgagtgacaccatctat-------taaaccatttacttacgttgtgggactctgcataggtgtccaactaatctgggtaggagg |
31935752 |
T |
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| Q |
148 |
tttgggaatgaatttatctccaaagaataagtatcctcctc |
188 |
Q |
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| T |
31935753 |
tttgggaatgaagttatctccaaagtataaataacctcctc |
31935793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 31973897 - 31974030
Alignment:
| Q |
48 |
atagtatatgtatgtatgagtggcaacatctatataatattaaatcatttactaactttgagggagttaggataggtgtccaactaatctgtgtaggagg |
147 |
Q |
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| T |
31973897 |
atagtatatgtatgtatgagtgacaccatctat-------taaaccgtttacttactttgcgggactctgcataggtatccaactaatctgtgtaggagg |
31973989 |
T |
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| Q |
148 |
tttgggaatgaatttatctccaaagaataagtatcctcctc |
188 |
Q |
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| T |
31973990 |
tttgggaatgaagttatctccaaagtataaataacctcctc |
31974030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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