View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_low_2 (Length: 563)
Name: NF4777_low_2
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 44449505 - 44450013
Alignment:
| Q |
19 |
gaacccccacactatagaggccggttgagagtctcacgttaccaattgatagggattgattaattaggccaatccttaattgggttgggaacttgcagct |
118 |
Q |
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| T |
44449505 |
gaacccccacactatagaggccagttgagagtctcacgttaccaattgatagggattgattaattaggccaatccttaattgggttgggaacttgcagct |
44449604 |
T |
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| Q |
119 |
ttcacatttgtatatctattctaatggttatgcttatgcatgtcttttgt--------tgtgagttaaaggtgccttgtgagagacttcagaaacaacta |
210 |
Q |
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| T |
44449605 |
ttcacatttgtatatctattctaatggttatgcttatgcatgtcttttgtagctttgttgtgagttaaaggtaccttgtgagagacttcagaaacaacta |
44449704 |
T |
|
| Q |
211 |
-----tatgtcatatttcatttagtatctactagtaactgattaagtaggggaggcagattttgttgttgatatttatattt--gattaagaaagctaac |
303 |
Q |
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| T |
44449705 |
ctgtatatgtcatatttcatttagtatctactagtaactgattaagtaggggaggcagattttgttgttgttatttatatttttgattaagaaatctaac |
44449804 |
T |
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| Q |
304 |
aagagatgtcatataattcttttagaaataattgtagtttttaatttttacactatatcatttagaaaacaaaattaactaatccaaatctcgaaattaa |
403 |
Q |
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| T |
44449805 |
aagagatgtcatataattcttttagaaataattgtagtttttaatttttacactatatcatttagaaaacaaaattaactaatccaaatctcaaaattaa |
44449904 |
T |
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| Q |
404 |
tgatatatattatcatcgtgtat-ggggagcttctaccacacattcataaagagttttggtataagctcttaattaatcatatctatccaaacagttact |
502 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
44449905 |
tgatatatattatcatcgtgtatgggggagcttctacgacacattcacaaagagttttggtataagcttttaattaatcatatttatccaaacagttatt |
44450004 |
T |
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| Q |
503 |
agtaaaaaa |
511 |
Q |
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| T |
44450005 |
agtaaaaaa |
44450013 |
T |
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