View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_low_5 (Length: 407)
Name: NF4777_low_5
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 33 - 384
Target Start/End: Complemental strand, 46050280 - 46049929
Alignment:
| Q |
33 |
aagcaaatactacacactaagaagctctgatactacgatacggataagatacgacacagatgcggagattcgtgaaattttttaaaatcaagatacgaca |
132 |
Q |
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| T |
46050280 |
aagcaaatactacacactaagaagctctgatactacgatacggataagatacgacacagatgcggagattcgtgaaattttttaaaatcaagatacgaca |
46050181 |
T |
|
| Q |
133 |
cagacaagctaatttctcataaatacataaacatataagtagttaatagacatagacatggttacatataacttccccacctatatcagtatctattatt |
232 |
Q |
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| T |
46050180 |
cagacaagctaatttctcataaatacataaacatataagtagttaatagacatagacatggttacatataacttccccacctatatcagtatatattatt |
46050081 |
T |
|
| Q |
233 |
tttcctattataaatgtgtcacaaaagcatacaattttgtctttagttggtacacatatcataaatatatcgcatttcgacttagatatggataactgtg |
332 |
Q |
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| T |
46050080 |
tttcctactataaatgtgtcacaaaagcatacaattttgtctttagttagtacacatatcataaagatatcacatttcgacttagatatggataactgtg |
46049981 |
T |
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| Q |
333 |
tactgtttttatttcgtaagaagcatcggtcaaaatatttccaaaaagaatg |
384 |
Q |
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| T |
46049980 |
tactgtttttatttcgtaagaagcattggtcaaaatatttccaaaaagaatg |
46049929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 139 - 355
Target Start/End: Complemental strand, 46068055 - 46067835
Alignment:
| Q |
139 |
agctaatttctcataaatacataaacatataagtagttaatagacatagacatggttacatataacttccccacctatatcagtatctattatttttcct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||| || |
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| T |
46068055 |
agctaatttctcataaatacataaacatataagtagttaatagacatagacatggttacatataacttccccgcctgtatcggtaagtattattttttct |
46067956 |
T |
|
| Q |
239 |
attataaatgtgtcacaaaagcatacaattttgtctttagttggtac-acatatcataaatatatcgcatttcgacttagatatggat---aactgtgta |
334 |
Q |
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| | |||||||||||||||||||| |||||||| ||||||| | || ||||||||||||| ||||| ||||||| |||||||| ||| ||||| ||| |
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| T |
46067955 |
actctaaatgtgtcacaaaagcatgcaattttgcttttagttaggacgacatatcataaatgtatcgtatttcgatttagatatcgataacaactgcgta |
46067856 |
T |
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| Q |
335 |
ctgtttttatttcgtaagaag |
355 |
Q |
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|||||| ||||||| |||||| |
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| T |
46067855 |
ctgtttctatttcgcaagaag |
46067835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 46068198 - 46068095
Alignment:
| Q |
36 |
caaatactacacactaagaagctctgatactacgatacggataagatacgacacagatgcggagattcgtgaaattttttaaaatcaagatacgacacag |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46068198 |
caaatactacacactaagaagctctgatactacgatacggataagatatgacacagatgcggagatttgtgaaattttttaaaatcaagatacgacacag |
46068099 |
T |
|
| Q |
136 |
acaa |
139 |
Q |
| |
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|||| |
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|
| T |
46068098 |
acaa |
46068095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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