View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4777_low_8 (Length: 332)
Name: NF4777_low_8
Description: NF4777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4777_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 37776485 - 37776172
Alignment:
| Q |
1 |
catcttgtaacataagcatgtgcaacatctgcactatagttgagagtgaaaacgaatggctccattttattgtcaataaaaaattaacagcatccaaaca |
100 |
Q |
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| T |
37776485 |
catcttgtaacataagcatgtgcaacatctgcaatatacttgagagtgaaaatgaatggctccattttattgtcaataaaaaattaacagcatccgaaca |
37776386 |
T |
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| Q |
101 |
agacgaaaaacataattttcctacatgtccctcacaagaaaaatagattaacacctattgtctgatttaccaaagaaaacgtcaatttccctaaatgttg |
200 |
Q |
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| T |
37776385 |
agacgaaaaacataattttcctacatgtccctcacaagaaaaatagattaacacctattgtctgatttaccaaagaaaacgtcaatttccataaatgttg |
37776286 |
T |
|
| Q |
201 |
acaaatattagcagataaattctgtagctcaggcttcaagcacctgacagcattcaatgcaatccttcgaccttcctccagcaatattttcccgaatgta |
300 |
Q |
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| T |
37776285 |
acaaatattagcagataaattatgtagctcaggcttcaagcacctgacagcat--aatgcaatccttcgaccttcctccagcaatattttcccgaatgta |
37776188 |
T |
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| Q |
301 |
attgttgctttgtact |
316 |
Q |
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| T |
37776187 |
attgttgctttgtact |
37776172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 290
Target Start/End: Complemental strand, 37783484 - 37783356
Alignment:
| Q |
162 |
ctgatttaccaaagaaaacgtcaatttccctaaatgttgacaaatattagcagataaattctgtagctcaggcttcaagcacctgacagcattcaatgca |
261 |
Q |
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| T |
37783484 |
ctgattttccaaacaaaacgtccatttccctaaatgttaactgagatcaacaaataaattttgtagcttaagcttcaagcacctgacagcgttcaacgca |
37783385 |
T |
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| Q |
262 |
atccttcgaccttcctccagcaatatttt |
290 |
Q |
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| T |
37783384 |
acccctcaacccttctccaacaatatttt |
37783356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 37780116 - 37780034
Alignment:
| Q |
170 |
ccaaagaaaacgtcaatttccctaaatgttgacaaatattagcagataaattctgtagctcaggcttcaagcacctgacagca |
252 |
Q |
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| T |
37780116 |
ccaaagaaagcgtcgatttccctaaaagttgactaagattggcagataagttttgtagctcaggcttccaacacctgacagca |
37780034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 37781488 - 37781438
Alignment:
| Q |
169 |
accaaagaaaacgtcaatttccctaaatgttgacaaatattagcagataaa |
219 |
Q |
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| T |
37781488 |
accaaagaaaacgtcaatttccttaaatgttaaccaatattagcagataaa |
37781438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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