View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-1 (Length: 918)
Name: NF4778-Insertion-1
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 148 - 914
Target Start/End: Complemental strand, 16162090 - 16161317
Alignment:
| Q |
148 |
ggaacagatagaagacaactcacagaattggaacaaccaaagaacgaaagttgggcggatgcaaggagaagaaagactcgtcctattcttgctggaggaa |
247 |
Q |
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| T |
16162090 |
ggaacagatagaagacaactcacagaattggaacaaccaaagaacaaaagctgggcggatgcaaggagaagaaagactcgccctattcttgctagaggaa |
16161991 |
T |
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| Q |
248 |
agcatcagcaaattgaatttttctttaaaatatcacaatataaatgggaaaatattgaaccgagtgttggaccaaacaaagaaatggttttggaacaaag |
347 |
Q |
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| T |
16161990 |
agcatcagcaaattgaatttttctttaaagtatcacaatataaatgggaaaatattgaaccgagtgctggaccaaacaaagaaatggttttggaacaaag |
16161891 |
T |
|
| Q |
348 |
gataaggcccaattgtcttgattaaggattgggcccaatatgaaatacatgttgtgagagaggataagcccatcaaaacaatatgaaaaacaggttgtga |
447 |
Q |
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| T |
16161890 |
gataaggcccaatagtcttgattaaggattgggcccaatatgaaatacatgttgtgagagaggataagcccatcaaaacaatatgaaaaacaggttgtga |
16161791 |
T |
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| Q |
448 |
tggaaatgataataatttctacgttacagtgcaaaatctaagtagaacatagacgggaaatcgattaaagaagcatttcacgtggattcgacaaacaaat |
547 |
Q |
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| T |
16161790 |
tggaaatgataataatttctacgttacagtgcaaaatctaagtagaacatagacgggaaatcgattaaagaagcatttcacatggattcgacaaacaaat |
16161691 |
T |
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| Q |
548 |
atgacagaaaatttaaatataaaccaggagaagataacg----gnnnnnnnnnntaaccttgcatattaaaacgaaatgagtagataacaacaaagaatt |
643 |
Q |
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| T |
16161690 |
atgacagaaaatttaaatataaaccaggagaagataacgtaaaaaaaataataataaccttgcaaattaaaacgaaatgagtagataacgacaaagaatt |
16161591 |
T |
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| Q |
644 |
tacaaatgattggataattataggggatcaaaataacgatgaaaatttacctttattctctcttaaaaaaggaacaatactctccaatcctaaaaaactc |
743 |
Q |
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|||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16161590 |
tacacatgattgaataattatgggggatcaaaataacgatgaaaatttacctttattctctcttaaaaaaggaacaatactctccaatcctaaaaacctc |
16161491 |
T |
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| Q |
744 |
caatctagacaaactaattcgcggccacttactacgatgcaacagggcataatgaaat-aatatgtgtgatcgaacccattaatctagaataccttg-aa |
841 |
Q |
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| T |
16161490 |
caatctagacaaactaattcgcggccacttactacgatgcaacagggcataatgaaataaatatgtgtgatcgaacccattaatctagaataccttgaaa |
16161391 |
T |
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| Q |
842 |
gnnnnnnnttgcattcccatcc-attaagtaaacaataggtattattcatttgatattattcatttgaatgaaa |
914 |
Q |
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| T |
16161390 |
gaaaaagattgcattcccatccaattaagtaaacaacaggtattattcatttgatattattcatttgaatgaaa |
16161317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 16162228 - 16162153
Alignment:
| Q |
9 |
ccatcaataacatagaccgacaaaacatcaattgcatgcaaacgggaacccattaggcgatcaacaggcaaatccg |
84 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16162228 |
ccatcaataacatagatcgacaaaacatcaattgcatgcaaatgggaacccattaggcgatcaacaggcaaatccg |
16162153 |
T |
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