View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778-Insertion-11 (Length: 386)

Name: NF4778-Insertion-11
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778-Insertion-11
NF4778-Insertion-11
[»] chr1 (1 HSPs)
chr1 (7-386)||(44966024-44966398)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 44966024 - 44966398
Alignment:
Q  7 agagtaatgaaaatgtttgttattgtaaaggaaatgaaatgaaattagattaggagtgatgattagtaaaataggtttttcagtttgtgtggtggtgaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||        ||||||||||||||    
T  44966024 agagtaatgaaaatgtttgttattgtaaaggaaatgaaat-----tagattaggagtgatgattagtaaaataggttt--------gtgtggtggtgaca 44966110  T
Q  107 caca--------gtgtacattagatgggccataatgaaaagaatgaatctattttcagtttcagttgatatgggatcnnnnnnnggtcacactctgacga 198  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  44966111 cacacacacacagtgtacattagatgggccataatgaaaagaatgaatctattttcagtttcagttgatatgggatctttttttggtcacactctgacga 44966210  T
Q  199 ctcttcctttgtt-----gtgttgtattgtgagttttgcactactttgcactctgcttgaggttgtattattattaattattatctcgatcaatctctca 293  Q
    |||||||||||||     ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||    |||||||||    
T  44966211 ctcttcctttgttttgttgtgttgtgttgtgagttttgcagtactttgcactctgcttgaggttgtattattatta-ttatcatctc----aatctctca 44966305  T
Q  294 agtatagtattttgattagattgctatctcaaaagattcaaagtaacaatatttcgtcttgtgactgtgtgagcattgatatgacttcaatgt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44966306 agtatagtattttgattagattgctatctcaaaagattcaaagtaacaatatttcgtcttgtgactgtgtgagcattgatatgacttcaatgt 44966398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University