View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-14 (Length: 307)
Name: NF4778-Insertion-14
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-14 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 15873913 - 15873613
Alignment:
| Q |
7 |
acttgccacccaatatggtttccaacattcaagaacatggtcaaatggaaacacaatctgaaggaagtgaacacaactcgatgaggaaaaatacaactca |
106 |
Q |
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| T |
15873913 |
acttgccacccaatatggtttccaacattgaagaacatggtaaaatggaaacacaatctgaaggaagtgaacacaattcgatgaggaaaaataaaactca |
15873814 |
T |
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| Q |
107 |
agaccaagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaat |
206 |
Q |
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| T |
15873813 |
agaccaagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcaagtggtagcaaat |
15873714 |
T |
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| Q |
207 |
aagacagatgagtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttcctannnnnnngttcaatgacgtcacacctt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15873713 |
aagacagatgagtggaactggagtaacatttcgttcacgtctaaatggtttaatggagaactaaggcttcctatttttttgttcaatgacgtcacacctt |
15873614 |
T |
|
| Q |
307 |
a |
307 |
Q |
| |
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| T |
15873613 |
a |
15873613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 15921183 - 15921484
Alignment:
| Q |
7 |
acttgccacccaatatggtttccaacattcaagaacatggtcaaatggaaacacaatctgaaggaagtgaacacaactcgatgaggaaaa-atacaactc |
105 |
Q |
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| T |
15921183 |
acttgtcacccaaaaaggtttccaacgtcgaaggacatggccaaatggaaacacagttggaaggaggtgaacatagttcaatgcggaaaaaatacaactc |
15921282 |
T |
|
| Q |
106 |
aagaccaagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaa |
205 |
Q |
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| T |
15921283 |
aagaccaagaagacagtgatgaggaagatattaattttaattggaatacttataagagcatacgggatctaaaaacagtaggaattcgagtggtagcaaa |
15921382 |
T |
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| Q |
206 |
taagacagatgagtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttcctannnnnnngttcaatgacgtcacacct |
305 |
Q |
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| T |
15921383 |
taagacagatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaattaaggcttcctatgtttttgtttaatgacgtcacacct |
15921482 |
T |
|
| Q |
306 |
ta |
307 |
Q |
| |
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|| |
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| T |
15921483 |
ta |
15921484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 15900161 - 15900406
Alignment:
| Q |
28 |
ccaacattcaagaacatggtcaaatggaaacacaatctgaaggaagtgaacacaactcgatgaggaaaaatacaactcaagaccaagaagatattgatga |
127 |
Q |
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||||| || ||||||||| |||||||||| ||||| ||||| |||||||||||| || | |||||||||| ||||||||| |||||| |||| | |
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| T |
15900161 |
ccaactttgaagaacatgcccaaatggaaaaacaatatgaagaaagtgaacacaa-tcca-----aaaaatacaaagcaagaccaaaaagatagtgataa |
15900254 |
T |
|
| Q |
128 |
ggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagacagatgagtggaactgg |
227 |
Q |
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| T |
15900255 |
gccagaaattgatttcaattggaatacttataagagcatacgggatctaaaaacagtaggaattcaagtggtagcaaataagacagataagtggacctgg |
15900354 |
T |
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| Q |
228 |
agtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttccta |
279 |
Q |
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| T |
15900355 |
agtaacatttctttcaagtctaaatggtttagtggcgaactaaggcttccta |
15900406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 144 - 307
Target Start/End: Complemental strand, 14060189 - 14060026
Alignment:
| Q |
144 |
aattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagacagatgagtggaactggagtaacatttcgttca |
243 |
Q |
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||||||||||||||||| |||||| |||||||||| | | |||||||||||||| | ||||||||||||||| |||| ||||||||| |||| |||| |
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| T |
14060189 |
aattggaatacttataaaagcataagggatctaaaaataataggaattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttctttca |
14060090 |
T |
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| Q |
244 |
agtctaaatggtttaatggagaactaaggcttcctannnnnnngttcaatgacgtcacacctta |
307 |
Q |
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| T |
14060089 |
agtctaagtggttgagtggagaactaagacttcctatttttttgttcaatgatgtcacacctta |
14060026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 15880511 - 15880428
Alignment:
| Q |
218 |
gtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttcctannnnnnngttcaatgacgtcac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15880511 |
gtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttcctatttttttgttcaatgacgtcac |
15880428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 147 - 279
Target Start/End: Complemental strand, 14048815 - 14048683
Alignment:
| Q |
147 |
tggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagacagatgagtggaactggagtaacatttcgttcaagt |
246 |
Q |
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|||||||||||||| |||||| |||||||||| | ||||||||||||||| | ||||||||||||||| |||| ||||||||| |||| ||||||| |
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| T |
14048815 |
tggaatacttataaaagcataagggatctaaaaatggtaggaattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttccttcaagt |
14048716 |
T |
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| Q |
247 |
ctaaatggtttaatggagaactaaggcttccta |
279 |
Q |
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|||| ||||| | |||||||||| | ||||||| |
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| T |
14048715 |
ctaagtggttgagtggagaactacgacttccta |
14048683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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