View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-16 (Length: 220)
Name: NF4778-Insertion-16
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-16 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 36346128 - 36346002
Alignment:
| Q |
6 |
caaatattccatacaaagtcttttgaatttgatattattttaattctctagtcaatggaggatatccaattttttacacatagaattagac---tgcctt |
102 |
Q |
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| T |
36346128 |
caaatatctcatacaaaattttttaaatttgatattattttaatcctctagtcaacggaggatatccaattttttacacatagaattagacccgcgcctt |
36346029 |
T |
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| Q |
103 |
ccatataggccacaagaattaatactg |
129 |
Q |
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| T |
36346028 |
ccatataggccacaagaattaatactg |
36346002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 36345964 - 36345906
Alignment:
| Q |
162 |
cggaagagaattagaacaatcccatttcaaaagtaaacaatcatgtaactacgtctctg |
220 |
Q |
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| T |
36345964 |
cggaaaagaattagaacaatcccatttcaaaagtaaacaatcatgtaactacgtctctg |
36345906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 36346199 - 36346145
Alignment:
| Q |
6 |
caaatattccatacaaagtcttttgaatttgatattattttaattctctagtcaa |
60 |
Q |
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| T |
36346199 |
caaatatcccatataaagtcttttgaatttgatattattttaatcctctaatcaa |
36346145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 36346270 - 36346216
Alignment:
| Q |
6 |
caaatattccatacaaagtcttttgaatttgatattattttaattctctagtcaa |
60 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
36346270 |
caaatatcccatacaaagtcttttagatttgatattattttaatcctctagtcaa |
36346216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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