View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-17 (Length: 153)
Name: NF4778-Insertion-17
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-17 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 3e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 26104594 - 26104455
Alignment:
| Q |
14 |
aagaataacacaagtgaaaatgatttatgatgagccagagaaggtaagatatacaacctacatgtcatttgcttacatccatctcttctctggacataca |
113 |
Q |
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| T |
26104594 |
aagaataacataagtgaaaatgatttatgatgagccagagaaggtaagatatacaacctacatgtcatttgcttacatccatctcttctctggacataca |
26104495 |
T |
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| Q |
114 |
tagagcatcttggacatctctgccatttttctcttttagc |
153 |
Q |
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| T |
26104494 |
tagagcatcttggacatctctgccatttttctcttttagc |
26104455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 33532196 - 33532247
Alignment:
| Q |
102 |
tctggacatacatagagcatcttggacatctctgccatttttctcttttagc |
153 |
Q |
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| T |
33532196 |
tctggacatgcattgagcattttggacatctctgccacttttctcttttagc |
33532247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 25027623 - 25027498
Alignment:
| Q |
28 |
tgaaaatgatttatgatgagccagagaaggtaagatatacaacctacatgtcatttgcttacatccatctcttctctggacatacatagagcatcttgga |
127 |
Q |
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| T |
25027623 |
tgaaaatgattaacgatgagccaaagaagccaagataaacaacctgcagcgcatgtgttcacatccaccatttctctggacatgcatagagcatttggga |
25027524 |
T |
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| Q |
128 |
catctctgccatttttctcttttagc |
153 |
Q |
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| T |
25027523 |
catctctgccatttttcactattagc |
25027498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 24991178 - 24991124
Alignment:
| Q |
99 |
ttctctggacatacatagagcatcttggacatctctgccatttttctcttttagc |
153 |
Q |
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| T |
24991178 |
ttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagc |
24991124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 25014715 - 25014661
Alignment:
| Q |
99 |
ttctctggacatacatagagcatcttggacatctctgccatttttctcttttagc |
153 |
Q |
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| T |
25014715 |
ttctctgtacatgcatagaacattttggacatctcttccacttttctcttttagc |
25014661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 16869151 - 16869100
Alignment:
| Q |
102 |
tctggacatacatagagcatcttggacatctctgccatttttctcttttagc |
153 |
Q |
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||||||||| ||| |||||| |||||||||||||||| |||||||||||||| |
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| T |
16869151 |
tctggacatgcattgagcattttggacatctctgccacttttctcttttagc |
16869100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 1454 - 1509
Alignment:
| Q |
98 |
cttctctggacatacatagagcatcttggacatctctgccatttttctcttttagc |
153 |
Q |
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||||||| |||||| |||||||| |||||||||||||||| || | ||||||||| |
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| T |
1454 |
cttctcttgacatagatagagcaatttggacatctctgccacttgtttcttttagc |
1509 |
T |
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