View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-19 (Length: 344)
Name: NF4778-Insertion-19
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 4925046 - 4924710
Alignment:
| Q |
8 |
gttatcatgtaaatagttttttacttaataaaagaataatatatgatttgcagtactatgccaaacacaaaggtcaacacaagaagtaggtagatctcag |
107 |
Q |
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| T |
4925046 |
gttatcatgtatatagttttttacttaataaaagaataatatatgatttgcagtactatgccaaacacaaaggtcaacacaagaagtaggtagatctcag |
4924947 |
T |
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| Q |
108 |
aaactcgatctaagtcaacatttcaagatgggtaatggtggtattattctatcaagtagttacaacgagcagcatcataatcctcagtatttccctactc |
207 |
Q |
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| T |
4924946 |
aaactcgatctaagtcaacatttcaagatgggtaatggtggtattattctatcaagtagttacaacgagcagcatcataatcctcagtatttcccaactc |
4924847 |
T |
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| Q |
208 |
tcctgaagccatgcccttccttctccttatcacgtaattattcacatacaaactcatctcatcatgatgattcaaggtaattaatcctacattcctttca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4924846 |
tcctgaagccatgcccttccttctccttatcacgtaattattcacatacaaactcatctcatcatgatgattcaaggtaattaatcctacattcctttca |
4924747 |
T |
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| Q |
308 |
tcttgttattataataatcatttttgcaattaatctc |
344 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4924746 |
tcttgttattataataatcatttttgcaattaatctc |
4924710 |
T |
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