View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4778-Insertion-20 (Length: 282)
Name: NF4778-Insertion-20
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-20 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 11098260 - 11098516
Alignment:
| Q |
15 |
caacacaaattctgacaatgttttcacataaaaacataaatataattaacataaactttcagttataatatttnnnnnnnnnnnnnnnnnnnttacctta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11098260 |
caacacaaattctgacaatgttttcacataaaaacataaatataattaacataaactttcagttataatatttaaaaaaaa-----------ttacctta |
11098348 |
T |
|
| Q |
115 |
ggtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctcttgagttcttcaacaatctgctcaccagaaacctcgtcgat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11098349 |
ggtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctctttagttcttcaacaatctgctcaccagaaacctcgtcgat |
11098448 |
T |
|
| Q |
215 |
atcgcgattccctccaacccatttctggacagcttgtcctgaactcaatccaagtccaacacctaatc |
282 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11098449 |
atcgcggatccctcctacccatttctggacagcttgtcctgaactcaatccaagtccaacacctaatc |
11098516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 44931636 - 44931573
Alignment:
| Q |
116 |
gtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctcttgagt |
179 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||| || ||| |||||||| |
|
|
| T |
44931636 |
gtaataaggaaagtcatcaaatgtaactttactatcctttccatcaatgactagtttcttgagt |
44931573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University