View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-23 (Length: 223)
Name: NF4778-Insertion-23
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-23 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 37339445 - 37339659
Alignment:
| Q |
9 |
tgtgttgaagctaggtttcccatatgggataagtatacgagactctcgaagttggttgggaaagtggaaaaaatatttaagccttcctataaatgatatt |
108 |
Q |
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| T |
37339445 |
tgtgttgaagctaggtttcccatatgggataagtatacaagactctcgaagttggttggaaaagtggaaaaaatatttaagccttcctataaatgatatt |
37339544 |
T |
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| Q |
109 |
gaaaccattgtccaattgaaaaagctattgaatgaatgattatttattatttttgataatatgaatgaatgattaaatggcattgagatctttacgaacc |
208 |
Q |
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| T |
37339545 |
gaaaccattgtccaattgaaaaagctattgaatgaatgattatttattatttttgataatatgaatgaatgattaaatggcattgagatctttacgaacc |
37339644 |
T |
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| Q |
209 |
ctgaatcctgaacta |
223 |
Q |
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||||||||||||||| |
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| T |
37339645 |
ctgaatcctgaacta |
37339659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 11299393 - 11299217
Alignment:
| Q |
13 |
ttgaagctaggtttcccatatgggataagtatacgagactctcgaagttggttgggaaagtggaaaaaatatttaagccttcctataaatgatattgaaa |
112 |
Q |
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| T |
11299393 |
ttgaagctaggtttcccatatgggataagtatacgagactctcaaagtgggttggaaaagtggaaaaa-tattttagccttcctataaatgatattgaaa |
11299295 |
T |
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| Q |
113 |
ccattgtccaattgaaaaagctattgaatgaatgattatttattatttttgataatatgaatgaatgattaaatggca |
190 |
Q |
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| T |
11299294 |
ccattggccaattgaaaaagccattgaatgaatgattatttattatttttgataatatgaatgaatgattaaatggca |
11299217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 47966635 - 47966440
Alignment:
| Q |
9 |
tgtgttgaagctaggtttcccatatgggataagtatacgagactctcgaagttggttgggaaagtggaaaaaatatttaagccttcctataaatgatatt |
108 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||| ||| ||||||||||||||||||||||||||| |
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| T |
47966635 |
tgtgttgaagctaggtt-cccatatgggataagtatacgagactctcaaagtgggttggaaaagtggacaaa-tatttaagccttcctataaatgatatt |
47966538 |
T |
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| Q |
109 |
gaaaccattgtccaattgaaaaagctattgaatgaatgattatttattatttttgataatatgaatgaatgattaaatggcattgagatctttacgaa |
206 |
Q |
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| T |
47966537 |
gaaaccattgtccatttgaaaaagatattgaatgaatgattatttattatttttgataatatgaaggaatgattaaatggcattgagatcattacgaa |
47966440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 33315173 - 33315256
Alignment:
| Q |
115 |
attgtccaattgaaaaagctattgaatgaatgattatttattatttttgataatatgaatgaatgattaaatggcattgagatc |
198 |
Q |
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| T |
33315173 |
attgtccatttgaaaaatttattgaaagaatgattatttattattattgataatatgaatgaataattaaatgacattgagatc |
33315256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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