View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778-Insertion-3 (Length: 641)

Name: NF4778-Insertion-3
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778-Insertion-3
NF4778-Insertion-3
[»] chr4 (4 HSPs)
chr4 (7-641)||(56008690-56009326)
chr4 (574-620)||(27131687-27131733)
chr4 (574-620)||(27131021-27131067)
chr4 (574-620)||(32754611-32754657)
[»] chr2 (3 HSPs)
chr2 (561-626)||(30289796-30289861)
chr2 (83-136)||(9645671-9645724)
chr2 (256-350)||(9645456-9645550)
[»] scaffold0001 (1 HSPs)
scaffold0001 (583-625)||(398645-398687)
[»] chr7 (2 HSPs)
chr7 (582-620)||(2811268-2811306)
chr7 (583-620)||(438693-438730)
[»] chr6 (4 HSPs)
chr6 (574-620)||(2468487-2468533)
chr6 (542-620)||(8013852-8013930)
chr6 (574-620)||(2467821-2467867)
chr6 (585-621)||(34406440-34406476)
[»] chr3 (8 HSPs)
chr3 (581-623)||(15802351-15802393)
chr3 (582-618)||(28286906-28286942)
chr3 (578-626)||(37817263-37817311)
chr3 (103-145)||(24538244-24538286)
chr3 (560-625)||(3014913-3014978)
chr3 (574-619)||(17105261-17105306)
chr3 (584-625)||(35724224-35724265)
chr3 (548-616)||(27020404-27020472)
[»] chr5 (1 HSPs)
chr5 (574-618)||(42233186-42233230)
[»] chr8 (2 HSPs)
chr8 (582-620)||(3943757-3943795)
chr8 (562-620)||(11556958-11557016)
[»] chr1 (2 HSPs)
chr1 (582-626)||(16012053-16012097)
chr1 (582-618)||(31157469-31157505)


Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 7 - 641
Target Start/End: Complemental strand, 56009326 - 56008690
Alignment:
Q  7 actaatctcatcaaatgttctgtatttataaagaaagatca--gagttgatcaataaaattcctttagctatctccaaataaagattcgtcaatgttttt 104  Q
    ||||||||||||||||||| |||||||| ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56009326 actaatctcatcaaatgttttgtatttacaaagaaaaatcacagagttgatcaataaaattcctttagctatctccaaataaagattcgtcaatgttttt 56009227  T
Q  105 tcatcaccctgcagaaattttataacattgttatggtatagttaagacaaacagaacaaacttgttagcatgtatcacccacgctaaccttttagaggag 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  56009226 tcatcaccctgcagaaattttataacattgttatcgtatagttaagacaaacagaacaaacttgttagcatgtatcagccacgctaaccttttagaggag 56009127  T
Q  205 tcttcgtttctgtttttcctgttatcatctgaacttaatattgttgaagcctccttttctctagcagctgcatctcttttcattttcttgcactctactt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56009126 tcttcgtttctgtttttcctgttatcatctgaacttaatattgttgaaacctccttttctctagcagctgcatctcttttcattttcttgcactctactt 56009027  T
Q  305 ccatggacttggtcagtgcatcgacttttttcatgaacatctgaaattatatttatatatgtagtttagtatggtacatggagacgatcatagtataatt 404  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56009026 ccatggacttggtcagtgcatcaacttttttcatgaacatctgaaattatatttatatatgtagtttagtatggtacatggagacgatcatagtataatt 56008927  T
Q  405 agtgtataattatgtcacaagtttatgaaatgtgtgttttatgtacctaaaactacagtaacgaactcatctatttcttttttaaaatggagagatccca 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  56008926 agtgtataattatgtcacaagtttatgaaatgtgtgttttatgtacctaaaactacagtaacgaactcatctatttcttttttaaaatggagagatccta 56008827  T
Q  505 cttgtagactgtgaaacattaacgcagacacatatacagacaccaaacacgacgttgacactaacctgaagacactggtaataatttaagaaaattaaag 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  56008826 cttgtagactgtgaaacattaacgcagacacatatacagacaccaaacacgacgttgacactaacctgaagacactggtaacaatttaagaaaattaaag 56008727  T
Q  605 taattgaatgtaaccatgtgtgaggatcgtgttggtt 641  Q
    ||||||||||||||||||||| |||||||||||||||    
T  56008726 taattgaatgtaaccatgtgtcaggatcgtgttggtt 56008690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 27131733 - 27131687
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  27131733 agacattggtaataatttaagaaaatggaagtaattgaatgtaacca 27131687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 27131067 - 27131021
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    ||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  27131067 agacattggtaataatttaagacaatgaaagtaattgagtgtaacca 27131021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Original strand, 32754611 - 32754657
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    ||||||| |||||| ||||||||||| ||||| ||||||||||||||    
T  32754611 agacacttgtaatagtttaagaaaatgaaagtgattgaatgtaacca 32754657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 626
Target Start/End: Original strand, 30289796 - 30289861
Alignment:
Q  561 gacactaacctgaagacactggtaataatttaagaaaattaaagtaattgaatgtaaccatgtgtg 626  Q
    |||||| || || ||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  30289796 gacactgacatgtagacactggtaataatttaagaaaatgtgagtaattgaatgtaaccatgtgtg 30289861  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 9645724 - 9645671
Alignment:
Q  83 ataaagattcgtcaatgttttttcatcaccctgcagaaattttataacattgtt 136  Q
    ||||||| || |||||||| |||||||||||||||| ||||||||| |||||||    
T  9645724 ataaagaatcttcaatgttctttcatcaccctgcagtaattttatagcattgtt 9645671  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 9645550 - 9645456
Alignment:
Q  256 tccttttctctagcagctgcatctcttttcattttcttgcactctacttccatggacttggtcagtgcatcgacttttttcatgaacatctgaaa 350  Q
    ||||| ||||||||||||   |||||||||||||| || || ||||||||||| | ||| |||| |||||| ||||| ||  ||| |||||||||    
T  9645550 tccttctctctagcagctatttctcttttcatttttttccattctacttccatagcctttgtcaatgcatcaactttctttgtgagcatctgaaa 9645456  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 583 - 625
Target Start/End: Original strand, 398645 - 398687
Alignment:
Q  583 taataatttaagaaaattaaagtaattgaatgtaaccatgtgt 625  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  398645 taataatttaagaaaattgaagtaattgaatgtaaccacgtgt 398687  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 582 - 620
Target Start/End: Original strand, 2811268 - 2811306
Alignment:
Q  582 gtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  2811268 gtaataatttaagaaaataaaagtaattgaatgtaacca 2811306  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 583 - 620
Target Start/End: Complemental strand, 438730 - 438693
Alignment:
Q  583 taataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  438730 taataatttaagaaaattgaagtaattaaatgtaacca 438693  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 2468533 - 2468487
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||    
T  2468533 agacattggtaataatttaagaaaatggaagtaattgaatgtaacca 2468487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 620
Target Start/End: Complemental strand, 8013930 - 8013852
Alignment:
Q  542 agacaccaaacacgacgttgacactaacctgaagacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    ||||||||||||||||  ||| |||||| || ||||||| |||||||||| | |||||  |||| ||||||||||||||    
T  8013930 agacaccaaacacgacactgatactaacatgtagacactagtaataatttgaaaaaatataagtgattgaatgtaacca 8013852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 2467867 - 2467821
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    ||||| |||||||||||||||| ||| ||||||||||| ||||||||    
T  2467867 agacattggtaataatttaagacaatgaaagtaattgagtgtaacca 2467821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 621
Target Start/End: Original strand, 34406440 - 34406476
Alignment:
Q  585 ataatttaagaaaattaaagtaattgaatgtaaccat 621  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  34406440 ataatttaagaaaatgaaagtgattgaatgtaaccat 34406476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 581 - 623
Target Start/End: Original strand, 15802351 - 15802393
Alignment:
Q  581 ggtaataatttaagaaaattaaagtaattgaatgtaaccatgt 623  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  15802351 ggtaataatttgagaaaatttaagtaattgaatgtaaccatgt 15802393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 618
Target Start/End: Original strand, 28286906 - 28286942
Alignment:
Q  582 gtaataatttaagaaaattaaagtaattgaatgtaac 618  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28286906 gtaataatttaagaaaatgaaagtaattgaatgtaac 28286942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 578 - 626
Target Start/End: Original strand, 37817263 - 37817311
Alignment:
Q  578 actggtaataatttaagaaaattaaagtaattgaatgtaaccatgtgtg 626  Q
    |||||||||||||| | ||||| ||||||||||||||||| ||||||||    
T  37817263 actggtaataattttaaaaaatgaaagtaattgaatgtaatcatgtgtg 37817311  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 24538286 - 24538244
Alignment:
Q  103 tttcatcaccctgcagaaattttataacattgttatggtatag 145  Q
    ||||||||| |||||  ||||||||||||||||||||||||||    
T  24538286 tttcatcacactgcaacaattttataacattgttatggtatag 24538244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 625
Target Start/End: Original strand, 3014913 - 3014978
Alignment:
Q  560 tgacactaacctgaagacactggtaataatttaagaaaattaaagtaattgaatgtaaccatgtgt 625  Q
    ||||||||||  | ||||||| |||||||||| | ||||||||| | |||||||||||| ||||||    
T  3014913 tgacactaacacgtagacacttgtaataattttaaaaaattaaattgattgaatgtaacaatgtgt 3014978  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 619
Target Start/End: Original strand, 17105261 - 17105306
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaacc 619  Q
    |||||||  ||||||||||||||||| ||||| |||||||||||||    
T  17105261 agacactaataataatttaagaaaataaaagtgattgaatgtaacc 17105306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 625
Target Start/End: Original strand, 35724224 - 35724265
Alignment:
Q  584 aataatttaagaaaattaaagtaattgaatgtaaccatgtgt 625  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  35724224 aataatttgagaaaatgaaagtaattgaatgtaaacatgtgt 35724265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 616
Target Start/End: Original strand, 27020404 - 27020472
Alignment:
Q  548 caaacacgacgttgacactaacctgaagacactggtaataatttaagaaaattaaagtaattgaatgta 616  Q
    |||||||||| |||| ||| || || | |||| ||||||| ||| ||||||| ||||||||||||||||    
T  27020404 caaacacgacattgatactgacatgtacacaccggtaatatttttagaaaatgaaagtaattgaatgta 27020472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 618
Target Start/End: Complemental strand, 42233230 - 42233186
Alignment:
Q  574 agacactggtaataatttaagaaaattaaagtaattgaatgtaac 618  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||    
T  42233230 agacactggtaatagtttaagaaaattaaagtaatcaaatgtaac 42233186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 582 - 620
Target Start/End: Original strand, 3943757 - 3943795
Alignment:
Q  582 gtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  3943757 gtaataatttaagaaaataaaagtgattgaatgtaacca 3943795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 620
Target Start/End: Complemental strand, 11557016 - 11556958
Alignment:
Q  562 acactaacctgaagacactggtaataatttaagaaaattaaagtaattgaatgtaacca 620  Q
    |||||||| || ||||||  |||||||||| |||||||| |||| ||||||||||||||    
T  11557016 acactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaacca 11556958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 626
Target Start/End: Complemental strand, 16012097 - 16012053
Alignment:
Q  582 gtaataatttaagaaaattaaagtaattgaatgtaaccatgtgtg 626  Q
    |||||||| ||||||| | ||||||||| ||||||||||||||||    
T  16012097 gtaataatctaagaaactaaaagtaattaaatgtaaccatgtgtg 16012053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 618
Target Start/End: Complemental strand, 31157505 - 31157469
Alignment:
Q  582 gtaataatttaagaaaattaaagtaattgaatgtaac 618  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  31157505 gtaataattgaagaaaactaaagtaattgaatgtaac 31157469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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