View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778-Insertion-4 (Length: 559)

Name: NF4778-Insertion-4
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778-Insertion-4
NF4778-Insertion-4
[»] scaffold0005 (2 HSPs)
scaffold0005 (155-318)||(253013-253174)
scaffold0005 (7-80)||(252862-252935)
[»] chr4 (45 HSPs)
chr4 (155-318)||(14564201-14564362)
chr4 (7-80)||(14564440-14564513)
chr4 (202-299)||(51922853-51922952)
chr4 (202-300)||(4954124-4954223)
chr4 (226-300)||(29149380-29149454)
chr4 (227-300)||(26426187-26426260)
chr4 (220-300)||(43781591-43781671)
chr4 (222-296)||(28986956-28987030)
chr4 (226-300)||(42944971-42945045)
chr4 (230-296)||(48550504-48550570)
chr4 (199-297)||(30842043-30842142)
chr4 (199-297)||(48407773-48407872)
chr4 (215-297)||(9889410-9889492)
chr4 (226-300)||(13167464-13167538)
chr4 (226-300)||(39636724-39636798)
chr4 (215-296)||(14072431-14072512)
chr4 (226-299)||(26651922-26651995)
chr4 (226-299)||(30887227-30887300)
chr4 (215-300)||(49136450-49136535)
chr4 (230-297)||(9893654-9893721)
chr4 (226-300)||(31520443-31520517)
chr4 (202-299)||(55638861-55638959)
chr4 (202-299)||(56241909-56242007)
chr4 (200-300)||(16566217-16566318)
chr4 (220-296)||(32238135-32238211)
chr4 (220-296)||(54152978-54153054)
chr4 (205-299)||(19592305-19592400)
chr4 (226-301)||(25312654-25312729)
chr4 (199-300)||(15603271-15603373)
chr4 (226-296)||(43772200-43772270)
chr4 (226-300)||(49519669-49519743)
chr4 (215-300)||(46830142-46830227)
chr4 (243-318)||(48908231-48908305)
chr4 (226-300)||(6138693-6138766)
chr4 (232-298)||(54488550-54488616)
chr4 (226-300)||(54735723-54735797)
chr4 (215-300)||(2175220-2175305)
chr4 (238-299)||(48257054-48257115)
chr4 (243-300)||(48550173-48550230)
chr4 (232-301)||(54150471-54150540)
chr4 (226-274)||(20191784-20191832)
chr4 (226-298)||(38305950-38306022)
chr4 (229-299)||(6505143-6505213)
chr4 (226-300)||(13183123-13183197)
chr4 (200-296)||(15619529-15619625)
[»] chr8 (32 HSPs)
chr8 (155-318)||(440244-440404)
chr8 (7-80)||(440484-440557)
chr8 (222-300)||(8124929-8125007)
chr8 (217-300)||(44926794-44926877)
chr8 (215-300)||(6399181-6399266)
chr8 (220-300)||(3097279-3097359)
chr8 (215-299)||(41981108-41981192)
chr8 (236-299)||(33627108-33627171)
chr8 (243-318)||(36114095-36114170)
chr8 (226-300)||(29023201-29023275)
chr8 (243-300)||(25698032-25698089)
chr8 (243-300)||(27649725-27649782)
chr8 (226-297)||(3619144-3619215)
chr8 (202-296)||(28425549-28425644)
chr8 (226-300)||(3467495-3467569)
chr8 (221-300)||(4941854-4941933)
chr8 (229-299)||(16915026-16915096)
chr8 (202-299)||(26125509-26125607)
chr8 (226-296)||(40742370-40742440)
chr8 (230-300)||(42148971-42149041)
chr8 (238-299)||(41289132-41289193)
chr8 (200-300)||(43550826-43550927)
chr8 (243-300)||(45147323-45147380)
chr8 (226-274)||(24297690-24297738)
chr8 (226-298)||(31246390-31246462)
chr8 (215-299)||(40742075-40742159)
chr8 (226-300)||(38152247-38152321)
chr8 (232-273)||(37458403-37458444)
chr8 (215-291)||(30081732-30081808)
chr8 (206-300)||(34342926-34343019)
chr8 (250-300)||(24897660-24897710)
chr8 (238-274)||(26243065-26243101)
[»] chr7 (33 HSPs)
chr7 (199-300)||(9456052-9456154)
chr7 (206-298)||(386543-386635)
chr7 (215-298)||(46541564-46541647)
chr7 (199-300)||(12632143-12632245)
chr7 (232-300)||(43631755-43631823)
chr7 (226-300)||(42740367-42740441)
chr7 (226-300)||(43737999-43738073)
chr7 (200-300)||(37639378-37639479)
chr7 (199-295)||(47301622-47301719)
chr7 (228-300)||(48134557-48134629)
chr7 (229-300)||(38230046-38230117)
chr7 (226-296)||(3342765-3342835)
chr7 (226-300)||(37562545-37562619)
chr7 (215-296)||(44967463-44967544)
chr7 (202-300)||(3375440-3375539)
chr7 (237-300)||(3622520-3622583)
chr7 (243-318)||(34010332-34010407)
chr7 (226-300)||(34366041-34366115)
chr7 (216-318)||(36920220-36920322)
chr7 (228-296)||(39391201-39391269)
chr7 (243-318)||(19095929-19096003)
chr7 (237-300)||(32205913-32205974)
chr7 (232-274)||(37886856-37886898)
chr7 (226-300)||(48459685-48459759)
chr7 (202-294)||(47021869-47021962)
chr7 (215-300)||(47217601-47217686)
chr7 (200-296)||(10372022-10372118)
chr7 (232-300)||(42904534-42904602)
chr7 (227-300)||(34011021-34011095)
chr7 (243-300)||(32186932-32186989)
chr7 (226-299)||(40903228-40903301)
chr7 (243-300)||(41715649-41715706)
chr7 (226-298)||(39634227-39634299)
[»] chr1 (32 HSPs)
chr1 (202-300)||(4369876-4369975)
chr1 (197-300)||(7826428-7826532)
chr1 (222-300)||(6166084-6166162)
chr1 (215-300)||(12468180-12468264)
chr1 (220-296)||(6464580-6464656)
chr1 (222-318)||(11023385-11023481)
chr1 (220-296)||(45710021-45710097)
chr1 (226-296)||(31223352-31223422)
chr1 (226-300)||(36205169-36205243)
chr1 (226-300)||(43728951-43729025)
chr1 (200-300)||(20800351-20800452)
chr1 (200-300)||(35569276-35569377)
chr1 (220-296)||(10470562-10470638)
chr1 (202-300)||(5410593-5410692)
chr1 (229-300)||(13055979-13056050)
chr1 (226-301)||(50406108-50406183)
chr1 (215-296)||(25229974-25230055)
chr1 (243-300)||(35536067-35536124)
chr1 (215-300)||(42850293-42850378)
chr1 (229-296)||(50977417-50977484)
chr1 (215-300)||(11051385-11051469)
chr1 (232-301)||(47123370-47123439)
chr1 (226-294)||(40229550-40229618)
chr1 (206-296)||(1199784-1199875)
chr1 (202-300)||(48510861-48510960)
chr1 (215-293)||(31933694-31933772)
chr1 (243-300)||(12247415-12247472)
chr1 (226-298)||(15884204-15884276)
chr1 (230-293)||(13931605-13931668)
chr1 (240-299)||(25061218-25061277)
chr1 (243-300)||(26058236-26058293)
chr1 (248-300)||(9447533-9447585)
[»] chr3 (36 HSPs)
chr3 (202-300)||(52966882-52966981)
chr3 (214-296)||(35425276-35425358)
chr3 (215-296)||(31618964-31619045)
chr3 (220-300)||(10853340-10853420)
chr3 (199-297)||(42318256-42318355)
chr3 (226-300)||(26519618-26519692)
chr3 (222-300)||(53074853-53074931)
chr3 (229-298)||(20813103-20813172)
chr3 (221-318)||(25847982-25848078)
chr3 (220-296)||(48189518-48189594)
chr3 (155-220)||(31619069-31619131)
chr3 (199-297)||(38125517-38125616)
chr3 (202-299)||(10334067-10334165)
chr3 (230-296)||(30811608-30811674)
chr3 (226-296)||(38172384-38172454)
chr3 (215-300)||(53179792-53179876)
chr3 (200-299)||(23496251-23496351)
chr3 (229-300)||(15511448-15511519)
chr3 (221-300)||(22736930-22737009)
chr3 (202-300)||(31084137-31084236)
chr3 (230-296)||(16246171-16246237)
chr3 (215-300)||(44224705-44224790)
chr3 (220-296)||(8424806-8424882)
chr3 (202-296)||(35930667-35930762)
chr3 (226-317)||(42475663-42475754)
chr3 (199-300)||(38340732-38340834)
chr3 (215-300)||(3348186-3348271)
chr3 (226-299)||(45423842-45423915)
chr3 (226-274)||(37698488-37698536)
chr3 (226-278)||(40244068-40244120)
chr3 (220-296)||(44939491-44939567)
chr3 (221-300)||(21224939-21225018)
chr3 (7-80)||(31619208-31619277)
chr3 (243-300)||(32357482-32357539)
chr3 (215-296)||(50664702-50664782)
chr3 (240-300)||(30810018-30810078)
[»] chr2 (28 HSPs)
chr2 (215-296)||(28261246-28261327)
chr2 (220-300)||(7472744-7472824)
chr2 (226-300)||(2213469-2213543)
chr2 (226-300)||(28127358-28127432)
chr2 (157-300)||(28641540-28641679)
chr2 (226-300)||(23358221-23358295)
chr2 (232-300)||(31562755-31562823)
chr2 (222-318)||(32501945-32502041)
chr2 (220-294)||(8170270-8170344)
chr2 (226-300)||(9988572-9988646)
chr2 (200-300)||(5916312-5916413)
chr2 (200-300)||(36312213-36312314)
chr2 (235-299)||(2234899-2234962)
chr2 (220-296)||(14821120-14821196)
chr2 (215-298)||(42516048-42516131)
chr2 (243-300)||(39141540-39141597)
chr2 (220-296)||(25940316-25940392)
chr2 (232-300)||(42089603-42089671)
chr2 (202-300)||(26208000-26208099)
chr2 (226-300)||(44619132-44619206)
chr2 (226-296)||(3552921-3552991)
chr2 (244-300)||(1945110-1945166)
chr2 (215-299)||(7295418-7295502)
chr2 (196-299)||(7296087-7296191)
chr2 (220-274)||(39106765-39106819)
chr2 (226-299)||(3602531-3602604)
chr2 (226-299)||(16467049-16467122)
chr2 (243-300)||(43436352-43436409)
[»] chr5 (32 HSPs)
chr5 (226-300)||(3667822-3667896)
chr5 (227-300)||(40791139-40791212)
chr5 (227-300)||(42146277-42146350)
chr5 (220-300)||(32454499-32454579)
chr5 (226-300)||(35760157-35760231)
chr5 (226-318)||(41740645-41740737)
chr5 (215-300)||(27021085-27021171)
chr5 (220-297)||(3060296-3060372)
chr5 (200-300)||(22482130-22482231)
chr5 (220-296)||(2430370-2430446)
chr5 (215-300)||(40885167-40885253)
chr5 (243-300)||(13253152-13253209)
chr5 (215-299)||(9275555-9275639)
chr5 (202-296)||(41834835-41834930)
chr5 (215-293)||(7714897-7714975)
chr5 (199-300)||(28869573-28869674)
chr5 (215-296)||(33953975-33954056)
chr5 (240-300)||(7386002-7386062)
chr5 (226-318)||(34106999-34107091)
chr5 (202-298)||(32030659-32030754)
chr5 (215-300)||(40495428-40495512)
chr5 (244-296)||(5710459-5710511)
chr5 (229-296)||(4292120-4292187)
chr5 (230-300)||(16158535-16158605)
chr5 (226-299)||(7178746-7178819)
chr5 (243-296)||(10058059-10058112)
chr5 (7-75)||(27020918-27020983)
chr5 (226-274)||(3747686-3747734)
chr5 (240-300)||(8049121-8049181)
chr5 (226-290)||(13676477-13676541)
chr5 (240-300)||(39988037-39988097)
chr5 (243-299)||(41959446-41959502)
[»] chr6 (13 HSPs)
chr6 (220-300)||(13739154-13739234)
chr6 (220-300)||(13744654-13744734)
chr6 (203-300)||(21455812-21455910)
chr6 (226-300)||(29409324-29409398)
chr6 (202-299)||(33899079-33899177)
chr6 (226-300)||(10826045-10826119)
chr6 (226-300)||(16442423-16442497)
chr6 (220-299)||(6208136-6208215)
chr6 (230-300)||(7215533-7215603)
chr6 (200-300)||(16548066-16548167)
chr6 (243-300)||(31132435-31132492)
chr6 (200-274)||(17830097-17830171)
chr6 (226-299)||(699512-699584)
[»] scaffold0369 (1 HSPs)
scaffold0369 (215-300)||(8392-8477)
[»] scaffold0381 (1 HSPs)
scaffold0381 (215-297)||(9054-9136)
[»] scaffold0007 (1 HSPs)
scaffold0007 (220-296)||(29199-29275)
[»] scaffold0184 (1 HSPs)
scaffold0184 (232-274)||(9257-9299)
[»] scaffold0394 (1 HSPs)
scaffold0394 (200-261)||(5943-6004)
[»] scaffold0041 (1 HSPs)
scaffold0041 (226-299)||(46717-46790)


Alignment Details
Target: scaffold0005 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 155 - 318
Target Start/End: Original strand, 253013 - 253174
Alignment:
Q  155 caacataaatataaatgattatctaaaatgcagagaaaggggtctagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattt 253  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  253013 caacataaatataaatgattatctaaaatg---agaaaggggtctagttttaaatacaacaaaaaggataagttggtcattatatattcaaaatcaattt 253109  T
Q  254 tgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  253110 tgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacat 253174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 252862 - 252935
Alignment:
Q  7 aaattaatattattttaaagtgaatttgtgaaccaaataaaattgaagttaatagtataatatccatttctctg 80  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  252862 aaattaatattattttaaagtaaatttgtgaaccaaataaaatttaagttaatagtataatatccatttctctg 252935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 155 - 318
Target Start/End: Complemental strand, 14564362 - 14564201
Alignment:
Q  155 caacataaatataaatgattatctaaaatgcagagaaaggggtctagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattt 253  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  14564362 caacataaatataaatgattatctaaaatg---agaaaggggtctagttttaaatacaacaaaaaggataagttggtcattatatattcaaaatcaattt 14564266  T
Q  254 tgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||    
T  14564265 tgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacat 14564201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 14564513 - 14564440
Alignment:
Q  7 aaattaatattattttaaagtgaatttgtgaaccaaataaaattgaagttaatagtataatatccatttctctg 80  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14564513 aaattaatattattttaaagtaaatttgtgaaccaaataaaatttaagttaatagtataatatccatttctctg 14564440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 51922853 - 51922952
Alignment:
Q  202 ttttaaatacaacaaaaa--gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||| ||||  ||||  |||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||||| |||||||    
T  51922853 ttttaaatacaactaaaaaggatagtttggtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaattactttta 51922952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 4954223 - 4954124
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  ||||| |||| | |||||||| ||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  4954223 ttttaaatacaattaaaaggataattaggtcattacacatttaaaattaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaa 4954124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 29149454 - 29149380
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||    
T  29149454 ttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaa 29149380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 26426260 - 26426187
Alignment:
Q  227 tggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  26426260 tggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaa 26426187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 43781671 - 43781591
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||||| |||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  43781671 gataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 43781591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 28986956 - 28987030
Alignment:
Q  222 taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||||||||| || ||||||||| ||||||||    
T  28986956 taagttggtcattacccatttaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcactt 28987030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 42945045 - 42944971
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||| || ||| ||||||||||||||||||    
T  42945045 ttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacataagaatcacttttaa 42944971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 48550570 - 48550504
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  48550570 tcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 48550504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 30842043 - 30842142
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  ||||| |||| || |||||| |||||| ||||||||||||||||||| |||||||||  | || |||||||||||||||||||    
T  30842043 tagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcacttt 30842142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 48407872 - 48407773
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  ||||| |||| || |||||| |||||| ||||||||||||||||||| |||||||||  | || |||||||||||||||||||    
T  48407872 tagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcacttt 48407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 9889492 - 9889410
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||| ||||| || ||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||||||||||||||||||    
T  9889492 aaaaggataatttagtcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataagaatcacttt 9889410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 13167464 - 13167538
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||  |||||  ||||||||||||||||||    
T  13167464 ttggtaattatgcatttaaaagcaattttgattcaatctatccaaacatcattaatacataagaatcacttttaa 13167538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 39636724 - 39636798
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||| ||| ||||||||||||||||||||||||  |||||||||||| || ||||| ||||||||||||||||    
T  39636724 ttggtcgttacacatttaaaatcaattttgattcatactatccaaacaacatcaactcgtaagaatcacttttaa 39636798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 14072431 - 14072512
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| ||||| || ||||||| ||||| ||||||||||||||||||| |||||||||||| || ||||||| ||||||||||    
T  14072431 aaaaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcattagaatcactt 14072512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 26651995 - 26651922
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| || ||  |||||||||||| |||||||    
T  26651995 ttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataagaattactttta 26651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 30887300 - 30887227
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||||||| ||||| ||||||||||||||| ||| | |||||||||  ||||||||||||||||||||||||    
T  30887300 ttggtcattacacattcaaaatcaattttgatacaaaccatccaaacatcattaactcataagaatcactttta 30887227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 49136450 - 49136535
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||| ||  ||| ||||||| || ||||||||||||||||||||||    
T  49136450 aaaaggataatttggtcattgtacattcaaaatcaattttgattaaaattattcaaacaacatcaactcataagaatcacttttaa 49136535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 9893654 - 9893721
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||| |||||||||||| ||| || |||||||||||| || |||||||||||||||||||    
T  9893654 tcattatacattcaaaatcaattttaatttaaactatccaaacaacatcaactcataagaatcacttt 9893721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 31520517 - 31520443
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| |||||||||||||||||| |||||| ||| ||||| || || ||||||||| ||||||||||||    
T  31520517 ttggtcattacacatttaaaatcaatttttattcaaactacccaaaaaacatcaactcataaaaatcacttttaa 31520443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 55638959 - 55638861
Alignment:
Q  202 ttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||  |||| ||||  |||||||||| | ||| ||||||||||||||||||   |||||||||||||| |||||||||||||| ||||||    
T  55638959 ttttaaatacaattaaaatgatagtttggtcattacatattcaaaatcaattttgattcatattatccaaacaatatcaactcataagaatccctttta 55638861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 56242007 - 56241909
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||  ||||| |||  |||||||||||||||| |||||||||||||||| ||   ||| ||||| ||| |||||||||||||||||||||    
T  56242007 ttttaaatacaattaaaaggatattttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataagaatcactttta 56241909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 16566217 - 16566318
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||||||| ||||| ||||||||||||||||||| |||||||||||| || ||| || | |||||||||||    
T  16566217 agttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttt 16566316  T
Q  299 aa 300  Q
    ||    
T  16566317 aa 16566318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 32238211 - 32238135
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| ||||||| ||||||||||| |||||||||||| || |||||||| |||||||||    
T  32238211 gataatttagtcattagacattcaaaatcagttttgattcaaactatccaaacaacatcaactcatatgaatcactt 32238135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 54152978 - 54153054
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| ||||||||||||||||||| |||| ||||||| || ||||||| ||||||||||    
T  54152978 gataatttagtcattagacattcaaaatcaattttgattcaaactattcaaacaacatcaactcatgagaatcactt 54153054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 19592400 - 19592305
Alignment:
Q  205 taaatacaacaaaaaga-taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||||||  |||||| ||| ||||||||| |||||| |||||||||||| |||||| ||||||||||||  | || || |||||||||||||||    
T  19592400 taaatacaattaaaagaataatttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaattcgtaagaatcactttta 19592305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 25312654 - 25312729
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaac 301  Q
    ||||| ||||||||| ||||| ||||||||||||||| ||||||||||| |  || ||||||||||| ||||||||    
T  25312654 ttggtaattatacatctaaaagcaattttgattcaatgtatccaaacaacaacaattcataagaatcgcttttaac 25312729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 15603271 - 15603373
Alignment:
Q  199 tagttttaaatacaa-caaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||| |||| ||||| ||||| ||| ||||| | |||| |||||||||||||| | ||  ||||||||||| || ||||||||||||||| |||    
T  15603271 tagttttaaaaacaatcaaaaggataatttgatcattgtgcattcaaaatcaattttgacttaaattatccaaacaacatcaactcataagaatcatttt 15603370  T
Q  298 taa 300  Q
    |||    
T  15603371 taa 15603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 43772270 - 43772200
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||||||| ||| ||||||||||||||||||||   ||||||||||| || ||||| ||||||||||||    
T  43772270 ttggtcattacacacttaaaatcaattttgattcatattatccaaacaacatcaactcgtaagaatcactt 43772200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 49519669 - 49519743
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||| |||||||||||||| || ||  ||||||||||||||| || |||||||||||| ||||||    
T  49519669 ttggtcattacacacttaaaatcaattttaatacatactatccaaacaatatcaattcataagaatcatttttaa 49519743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 46830227 - 46830142
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||| || |||||||||||||||||||||  |   ||||||||||| || ||||||||||||||| ||||||    
T  46830227 aaaaggataatttggtcaatacacatttaaaatcaattttgatgtagaatatccaaacaacatcaactcataagaatcaattttaa 46830142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 48908231 - 48908305
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||||||||||||||||| |||||||||||| || |||| ||| |||| |||||||| || |||||| |||||||    
T  48908231 aaaatcaattttgattcaagctatccaaacaacatcaacttatatgaattacttttaagcg-aggtatccaaacat 48908305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 6138766 - 6138693
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||||| ||| |||||||| |||||| |||||||||||| || |||||||| |||||| ||||||    
T  6138766 ttggtcattacacattcaaa-tcaattttcattcaaactatccaaacaacatcaactcatatgaatcatttttaa 6138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 54488550 - 54488616
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||| |||||||||||||||||||| |||  ||||||||||| || || | |||||||||||||||    
T  54488550 attatgcatttaaaatcaattttgatccaagttatccaaacaaaatgaatttataagaatcactttt 54488616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 54735797 - 54735723
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||||| || ||||||||||||| ||  ||  ||||||| || ||||||||||||||||||||||    
T  54735797 ttggtcattacacattcaagatcaattttgatttaaaatactcaaacaacatcaactcataagaatcacttttaa 54735723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 2175305 - 2175220
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| || |||||| ||| || |||||||||||| |||||| |||||||||||| || ||| ||| | ||||||||||||    
T  2175305 aaaaggataatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaa 2175220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 48257054 - 48257115
Alignment:
Q  238 catttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||| ||||||||||||||| |||| ||||||||||| || || | ||||||||||||||||    
T  48257054 cattcaaaatcaattttgatccaatttatccaaacaacatgaatttataagaatcactttta 48257115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 48550173 - 48550230
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| || ||||||||||||||||||| || ||||| |||| ||||||||    
T  48550173 aaaatcaattttaatccaatctatccaaacaatatcaattcatatgaattacttttaa 48550230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 54150471 - 54150540
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaac 301  Q
    ||||||||| ||||| ||||||||||| ||| ||||||||||| |  |||| |||||||||| |||||||    
T  54150471 attatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcatttttaac 54150540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 20191832 - 20191784
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||| |||||||||||||||| |||||||||||||  |||||||||||    
T  20191832 ttggtaattatacatttaaaattaattttgattcaagttatccaaacaa 20191784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 38305950 - 38306022
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||| ||||| |||| ||||||||||||||| |||  ||||||||||| || || | |||||||||||||||    
T  38305950 ttggtaattatgcattcaaaatcaattttgatccaagttatccaaacaacatgaatttataagaatcactttt 38306022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 6505143 - 6505213
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||| ||| |||||||||||||| | || |||||||||||| || || |||| | |||||||||||    
T  6505143 gtcattatatattcaaaatcaattttgacttaaactatccaaacaacatcaagtcatgataatcactttta 6505213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 13183197 - 13183123
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||| |||||||||||||||| ||  |||||||| || || |||| |||| ||||| ||||||    
T  13183197 ttggtcattttacattcaaaatcaattttgatttaaattatccaaaaaacatcaacttataaaaatcatttttaa 13183123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 15619529 - 15619625
Alignment:
Q  200 agttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||||||  |||| ||||| || ||||||| ||||| || |||| ||||||||||| |||||||||||| || ||| || | |||||||||    
T  15619529 agttttaaatacaattaaaatgataatttagtcattacacattcaagatca-ttttgattcaaactatccaaacaacatcaacccacatgaatcactt 15619625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 155 - 318
Target Start/End: Complemental strand, 440404 - 440244
Alignment:
Q  155 caacataaatataaatgattatctaaaatgcagagaaaggggtctagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattt 253  Q
    |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||    
T  440404 caacataaatataaatgattatctaaat----gagaaaggggtctagttttaaatacaacaaaaaggataagttggtcattatacattcaaaatcagttt 440309  T
Q  254 tgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||||| ||| |||| |||||||    
T  440308 tgattcaatctatccaaacaacgttaactcataagaatcatttttaactgaatgtatccaaacat 440244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 440557 - 440484
Alignment:
Q  7 aaattaatattattttaaagtgaatttgtgaaccaaataaaattgaagttaatagtataatatccatttctctg 80  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  440557 aaattaatattattttaaagtgagtttgtgaaccaaataaaatttaagttaatagtataatatccatttctctg 440484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 8124929 - 8125007
Alignment:
Q  222 taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||  | ||||| ||||||||||||||||    
T  8124929 taagttggtcattatccatttaaaatcaattttgattcaaactatccaaacaacttcaactcctaagaatcacttttaa 8125007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 44926794 - 44926877
Alignment:
Q  217 aaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||| || || ||||||||||||||||||||||    
T  44926794 aaagataatttggtcattttacattcaaaattaattttgattcaaactatccaaataacatcaactcataagaatcacttttaa 44926877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 6399266 - 6399181
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| |||||||||  ||||| |||||||||||||||| ||  ||||||||||| || ||||||||||||||||||||||    
T  6399266 aaaaagataatttggtcattgcacattcaaaatcaattttgattaaaattatccaaacaacatcaactcataagaatcacttttaa 6399181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 3097359 - 3097279
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||| || || || ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  3097359 gataatttggtcaatacacgttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 3097279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 41981108 - 41981192
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||||||  |||||||||  | |||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||||    
T  41981108 aaaaagatagtttggtcattccatatttaaaatcaattttgattcaaagtatccaaacaacatcaactcataagaatcactttta 41981192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 33627171 - 33627108
Alignment:
Q  236 tacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  33627171 tacattcaaaatcgattttgattcaaactatccaaacaacattaactcataagaatcactttta 33627108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 36114170 - 36114095
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    |||||||||||||||||||  |||||||||||||| |||||||||||||||||||||| |||  |||| |||||||    
T  36114170 aaaatcaattttgattcaaattatccaaacaatatcaactcataagaatcacttttaaacgagtgtatccaaacat 36114095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 29023201 - 29023275
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||| || ||||||||| ||||| ||||||    
T  29023201 ttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataacaatcaattttaa 29023275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 25698089 - 25698032
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  25698089 aaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 25698032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 27649725 - 27649782
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  27649725 aaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 27649782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 3619215 - 3619144
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||| ||  | | ||||||||||||||    
T  3619215 ttggtaattatacatttaaaatcaattttgattcaaactatccaaacaacatacattgataagaatcacttt 3619144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 28425644 - 28425549
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||||  ||||| |||  |||||||||| || || ||||||||||||||||||| ||||||||||||  | ||||||||||||||||||    
T  28425644 ttttaaatacaattaaaaggatagtttggtcattacacgttcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaatcactt 28425549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 3467495 - 3467569
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||  | ||||||||||||||||||||||| |||||||| ||| || || |||||||||||||||||||    
T  3467495 ttggtcattccatatttaaaatcaattttgattcaaactatccaaccaacatcaattcataagaatcacttttaa 3467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 4941933 - 4941854
Alignment:
Q  221 ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||||||| |||||| |||||||||||| ||||||  ||| ||||||| || |||||||||||||| |||||||    
T  4941933 ataatttggtcattttacattcaaaatcaattttaattcaaattattcaaacaacatcaactcataagaatcgcttttaa 4941854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 16915026 - 16915096
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||| ||||| ||||||||||||||| ||| | | |||||||  ||||||||||||||||||||||||    
T  16915026 gtcattacacattcaaaatcaattttgatacaaaccaaccaaacatcattaactcataagaatcactttta 16915096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 26125509 - 26125607
Alignment:
Q  202 ttttaaatacaac-aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||  |||||||||  || ||||||| ||||| |||||||||||||||| || |  |||||||| ||| ||||||||||||||| |||||    
T  26125509 ttttaaatacaattaaaaagatattttcgtcattacacattcaaaatcaattttgatttaaaccgtccaaacattatcaactcataagaatcattttta 26125607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 40742440 - 40742370
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||| || |||||||||||||||||||||| ||  ||||||||||  || ||||||||||||||||||    
T  40742440 ttggtcactacacatttaaaatcaattttgatttaaaatatccaaacatcatcaactcataagaatcactt 40742370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 42148971 - 42149041
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| |||||| |||||||||||||||||||  |||| |||||| || |||||||| |||||||||||||    
T  42148971 tcattttacattcaaaatcaattttgattcaaattatctaaacaacatcaactcatacgaatcacttttaa 42149041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 41289193 - 41289132
Alignment:
Q  238 catttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||| ||||||||||||||||||| |||||||||||| || |||  ||||||||||||||||    
T  41289193 cattcaaaatcaattttgattcaaactatccaaacaacatcaacctataagaatcactttta 41289132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 43550826 - 43550927
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||| ||| ||||| |||||||||||||||||||  ||||||||||| || ||| || |||||||||||||    
T  43550826 agttttaaatacaattaaaaggatagtttagtctttacacattcaaaatcaattttgattcaaattatccaaacaacatcaacccacaagaatcactttt 43550925  T
Q  299 aa 300  Q
    ||    
T  43550926 aa 43550927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 45147380 - 45147323
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||||||  ||| |||||||||| |||| |||||||||||||||||    
T  45147380 aaaatcaattttgattcaagttattcaaacaatatcaacttataagaatcacttttaa 45147323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 24297738 - 24297690
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  24297738 ttggtaattatacatgtaaaatcaattttgattcaaactatccaaacaa 24297690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 31246462 - 31246390
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||| ||||| |||||||||||||||||||| |||  ||||||||||| || || | |||||||||||||||    
T  31246462 ttggtaattatgcatttaaaatcaattttgatccaagttatccaaacaacatgaatttataagaatcactttt 31246390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 40742075 - 40742159
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||| ||||| ||| |||||| ||||| |||||||| ||| ||||||   ||||||||||||| ||||||||||||||| |||||    
T  40742075 aaaaggataatttgatcattacacattcaaaatcaagtttcattcaaatcatccaaacaatatcaactcataagaatcaatttta 40742159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 38152321 - 38152247
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| || || |||||||||||||||| ||  ||||||||| | || ||||||||||||||| ||||||    
T  38152321 ttggtcattacacgttcaaaatcaattttgatttaaagtatccaaaccacatcaactcataagaatcatttttaa 38152247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 37458444 - 37458403
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaaca 273  Q
    |||||||||| ||||||||||||||||||| |||||||||||    
T  37458444 attatacattcaaaatcaattttgattcaaactatccaaaca 37458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 30081808 - 30081732
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaat 291  Q
    |||| ||||| |||||||||| |||| |||||||||||||||  ||| |||||||||||| || | | |||||||||    
T  30081808 aaaaggataatttggtcattacacatctaaaatcaattttgaaacaaactatccaaacaacatcagcccataagaat 30081732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 300
Target Start/End: Complemental strand, 34343019 - 34342926
Alignment:
Q  206 aaatacaacaaaaagat-aagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||  ||||||| || |||||||||| || || |||||||||||||||||||  ||||||||||| ||  ||| |||||||||||||||||    
T  34343019 aaatacaattaaaagattaatttggtcattacac-ttcaaaatcaattttgattcaaattatccaaacaacatccact-ataagaatcacttttaa 34342926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 24897710 - 24897660
Alignment:
Q  250 attttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  ||||||||||| || ||||||||||||||| ||||||    
T  24897710 attttgattcaaattatccaaacaacatcaactcataagaatcaattttaa 24897660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 26243065 - 26243101
Alignment:
Q  238 catttaaaatcaattttgattcaatctatccaaacaa 274  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  26243065 cattcaaaatcaattttgattcaaactatccaaacaa 26243101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 9456052 - 9456154
Alignment:
Q  199 tagttttaaatacaac-aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  |||||||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||    
T  9456052 tagttttaaatacaattaaaaagataatttggtcattttacattcaaaatcaattttgattcaaactatccaaacaagatcaactcataagaatcacttt 9456151  T
Q  298 taa 300  Q
    |||    
T  9456152 taa 9456154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 386635 - 386543
Alignment:
Q  206 aaatacaacaaaaagataagttggtcattatacatttaaaa-tcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||| || |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||    
T  386635 aaatagaataaaaggataatttggtcattatacatttaaaaatcaattttgattcaatctatccaaacaacatcaa-tcataagaatcactttt 386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 46541564 - 46541647
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaa-tcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  46541564 aaaaggataatttggtcattatacatttaaaaatcaattttgattcaatctatcaaaacaatatcaa-tcataagaatcactttt 46541647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 12632245 - 12632143
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  ||||| |||  |||||||||| ||||| ||||||||||||||||||| | || ||||||| || |||||||||||||||||||    
T  12632245 tagttttaaatacaattaaaaggatattttggtcattacacattcaaaatcaattttgattcaaacaattcaaacaacatcaactcataagaatcacttt 12632146  T
Q  298 taa 300  Q
    |||    
T  12632145 taa 12632143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 43631823 - 43631755
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| | |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  43631823 attatacattcacaatcaattttgattcaatatatccaaacaatatcaactcaaaagaatcacttttaa 43631755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 42740367 - 42740441
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||| ||||||||||||||||| ||  ||||||||||||||| ||| ||||||||||||||||||    
T  42740367 ttggtcattacacacttaaaatcaattttgatacatactatccaaacaatatcaacacataagaatcacttttaa 42740441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 43738073 - 43737999
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||  ||||| ||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||    
T  43738073 ttggtcatttcacattcaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaa 43737999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 37639378 - 37639479
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||||||| ||||||||||| ||||||||||||| |||||||||||| || ||| || |||||||||||||    
T  37639378 agttttaaatacaattaaaaggatagtttagtcattacacatttaaaattaattttgattcaaactatccaaacaacatcaacccacaagaatcactttt 37639477  T
Q  299 aa 300  Q
    ||    
T  37639478 aa 37639479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 47301719 - 47301622
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcact 295  Q
    |||||||||||| ||  ||||| |||| || |||||| |||||| ||||||||||||||||||| |||||||||||| || ||| |||||||||||||    
T  47301719 tagttttaaatataattaaaaggataatttagtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaacccataagaatcact 47301622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 48134557 - 48134629
Alignment:
Q  228 ggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||| || |||| |||| ||||||||||||    
T  48134557 ggtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacttataaaaatcacttttaa 48134629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 38230046 - 38230117
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||| || ||| || | |||||||||||||    
T  38230046 gtcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 38230117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 3342765 - 3342835
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||||||| | ||| ||||||||||||||||||| |||| ||||||| || ||||||||||||||||||    
T  3342765 ttggtcattacatattcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcactt 3342835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 37562545 - 37562619
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||||  |||||||||||| |||||| |||||||||||| || |||||||| |||||||||||||    
T  37562545 ttggtcattacacatacaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaa 37562619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 44967544 - 44967463
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| ||||| |||||||||| | | | |||||||||||||||||||  ||||||||||| || ||||||||||||||||||    
T  44967544 aaaaggataatttggtcattacaaactcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcactt 44967463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 3375440 - 3375539
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  ||||| |||| |||||||||  ||||| ||||||||||||||| |||   |||||||||| ||  |||||||||||||||||||||    
T  3375440 ttttaaatacaattaaaaggataatttggtcattgcacattcaaaatcaattttgatccaaatcatccaaacaacatcgactcataagaatcacttttaa 3375539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 3622583 - 3622520
Alignment:
Q  237 acatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||||||||| |  |||||||||||| || ||||| ||||||||||||||||    
T  3622583 acatttaaaatcaattttgatttatactatccaaacaacatcaactcgtaagaatcacttttaa 3622520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 34010332 - 34010407
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||| ||||||||||||| |||||||||||| || |||||||||||| |||||||||  ||  ||||||||||||    
T  34010332 aaaattaattttgattcaaactatccaaacaacatcaactcataagaaccacttttaaatgagtgtattcaaacat 34010407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 34366115 - 34366041
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||  | || |||||||||||| |||||| |||||||||||| || ||||||||| ||||||||||||    
T  34366115 ttggtcattacgccttcaaaatcaatttttattcaaactatccaaacaacatcaactcataaaaatcacttttaa 34366041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 36920322 - 36920220
Alignment:
Q  216 aaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaa 315  Q
    |||||||||  ||||||||||| |||   |||||||||||||||||| || |||||||| || |||||| ||||||||| |||||   || |||||||||    
T  36920322 aaaagataatatggtcattatatattcgcaatcaattttgattcaatgtacccaaacaacatcaactcaaaagaatcacctttaattaaacgtattcaaa 36920223  T
Q  316 cat 318  Q
    |||    
T  36920222 cat 36920220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 39391269 - 39391201
Alignment:
Q  228 ggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||||| || || ||||||||||||||||||| |||| ||||||| || || |||||||||||||||    
T  39391269 ggtcattacacgttcaaaatcaattttgattcaaactattcaaacaacatcaattcataagaatcactt 39391201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 19095929 - 19096003
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    |||||||||||||||||||  ||||||||||| | |||||||||||||||| |||||| |||  |||| |||||||    
T  19095929 aaaatcaattttgattcaaattatccaaacaaca-taactcataagaatcatttttaaacgagtgtatccaaacat 19096003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 32205913 - 32205974
Alignment:
Q  237 acatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||||||||||||  |||| ||||||| | |||||||||||||||||||||||    
T  32205913 acatttaaaatcaattttgattcatactat-caaacaaca-taactcataagaatcacttttaa 32205974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 37886898 - 37886856
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  37886898 attatatatttaaaatcaattttgattcaaactatccaaacaa 37886856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 48459685 - 48459759
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||| |||||||||||||| || ||  |||||||||||| ||  | |||||||||||||||||||    
T  48459685 ttggtcattacacacttaaaatcaattttaatacatactatccaaacaacatccattcataagaatcacttttaa 48459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 47021869 - 47021962
Alignment:
Q  202 ttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcac 294  Q
    ||||||||||||  |||| ||||| |||||||||  ||||| |||||||||||| ||||||  ||||||||||| || || || ||||||||||    
T  47021869 ttttaaatacaattaaaatgataatttggtcattgcacattcaaaatcaattttcattcaaattatccaaacaacatcaattcgtaagaatcac 47021962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 47217686 - 47217601
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| || |||||| ||| || |||||||||||| |||||| |||||||||||| || ||| ||| | ||||||||||||    
T  47217686 aaaaggataatttagtcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaa 47217601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 10372118 - 10372022
Alignment:
Q  200 agttttaaatacaacaaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||||||  ||| |||   || |||||||  |||| ||||||||||||||||||| |||||| ||||| || ||| || |||||||||||    
T  10372118 agttttaaatacaattaaaggatggtttagtcattacgcattcaaaatcaattttgattcaaactatccgaacaacatcaacccacaagaatcactt 10372022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 42904534 - 42904602
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| |||||||||  |||||||||| ||  ||| ||||||| ||||| |||||||||||||||||||    
T  42904534 attatgcatttaaaagtaattttgatttaaaatatacaaacaaaattaattcataagaatcacttttaa 42904602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 34011095 - 34011021
Alignment:
Q  227 tggtcattatacatttaaaatcaattttgattcaatctatcc-aaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| || || |||||||||||||||| ||  || || |||||| || ||||||||||||||||||||||    
T  34011095 tggtcattacacgttcaaaatcaattttgatttaaagtaccccaaacaacatcaactcataagaatcacttttaa 34011021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 32186932 - 32186989
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| || |||||||||||||||| || || ||||| |||| ||||||||    
T  32186932 aaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaa 32186989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 40903301 - 40903228
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| |||||||||  ||||||||||||||||  | |||||||||||| || || | |||| |||||||||||    
T  40903301 ttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaatcactttta 40903228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 41715649 - 41715706
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| || |||||||||||||||| || || ||||| |||| ||||||||    
T  41715649 aaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaa 41715706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 39634299 - 39634227
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||| ||||| |||| ||||||||||||||| |||  ||||||||||| |  || | |||||||||||||||    
T  39634299 ttggtaattatgcattcaaaatcaattttgatccaagttatccaaacaacaagaatttataagaatcactttt 39634227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 4369975 - 4369876
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  ||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  4369975 ttttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaa 4369876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 197 - 300
Target Start/End: Complemental strand, 7826532 - 7826428
Alignment:
Q  197 tctagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcact 295  Q
    |||| ||||||||||||  ||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| || || ||||||||||||||    
T  7826532 tctaattttaaatacaattaaaaggataacttggtcattacacatttaaaatcaattttgattcaacctatccaaacaacatcaattcataagaatcact 7826433  T
Q  296 tttaa 300  Q
    |||||    
T  7826432 tttaa 7826428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 6166084 - 6166162
Alignment:
Q  222 taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||  |||||||||||||||||||||||| ||| |||||||| || ||||| ||||||||||||||||    
T  6166084 taagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaacatcaactcctaagaatcacttttaa 6166162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 12468180 - 12468264
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||    
T  12468180 aaaaggataatttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaa-atcaactcataaaaatcacttttaa 12468264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 6464580 - 6464656
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  6464580 gataatttagtcattagacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 6464656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 222 - 318
Target Start/End: Complemental strand, 11023481 - 11023385
Alignment:
Q  222 taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||||||||||||  |||||||||||||||||||||||| ||| ||||||||||| ||||| ||| ||| ||||||||  ||| |||| |||||||    
T  11023481 taagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattgaatgtatccaaacat 11023385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 45710021 - 45710097
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  45710021 gataatttagtcattagacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 45710097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 31223352 - 31223422
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||||||| ||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  31223352 ttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcactt 31223422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 36205169 - 36205243
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||| ||| ||| |||| ||||||||||||||||    
T  36205169 ttggtcattaaacattcaaaatcaattttgattcaaactatccaagcaacattcactcgtaagaatcacttttaa 36205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 43729025 - 43728951
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||  | ||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  43729025 ttggtcatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 43728951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 20800452 - 20800351
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||| || ||||||||||||| ||||||||| ||||||||| |||||||||||| || ||| || | |||||||||||    
T  20800452 agttttaaatacaattaaaaggataatttagtcattatacattcaaaatcaatattgattcaaactatccaaacaacatcaacccacatgaatcactttt 20800353  T
Q  299 aa 300  Q
    ||    
T  20800352 aa 20800351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 35569377 - 35569276
Alignment:
Q  200 agttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  |||| ||||  || ||||||||||||| ||||||||||||||||||| |||||||||||| || ||| || | |||||||||||    
T  35569377 agttttaaatacaattaaaatgatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttt 35569278  T
Q  299 aa 300  Q
    ||    
T  35569277 aa 35569276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 10470562 - 10470638
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || |||| |||||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  10470562 gataatttagtcactatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcactt 10470638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 5410593 - 5410692
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  ||||| |||  |||||||||| | ||| |||||||||| |||||||| |||||||||||| || || |||||||||||||||||||    
T  5410593 ttttaaatacaattaaaaggatagtttggtcattacatattcaaaatcaattatgattcaaactatccaaacaacatcaagtcataagaatcacttttaa 5410692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 13055979 - 13056050
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||  |||| |||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||    
T  13055979 gtcattacgcattcaaaatcaatttttattcaaactatccaaacaatatcaactcataaaaatcacttttaa 13056050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 50406108 - 50406183
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaac 301  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||||||| |  |||| |||||||||| |||||||    
T  50406108 ttggtaattatacatttaaaaacaattttgattcaatgtatccaaacaacaacaacttataagaatcatttttaac 50406183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 25229974 - 25230055
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| ||||| |||||||||| ||| | |||||||||||| |||||| |||||||||||| || |||| |||||||||||||    
T  25229974 aaaaggataatttggtcattacacactcaaaatcaattttcattcaaactatccaaacaacatcaactaataagaatcactt 25230055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 35536067 - 35536124
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||    
T  35536067 aaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttttaa 35536124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 42850378 - 42850293
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||| || ||||| |||||||||||||||  ||  ||||||||||| || ||||||||||||||||||||||    
T  42850378 aaaaggataatttggtcaatacacattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatcacttttaa 42850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 50977484 - 50977417
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||| ||||| |||||||||||| |||||| |||||||||||||||  |||||||| ||||||||    
T  50977484 gtcattacacattcaaaatcaatttttattcaaactatccaaacaatatctactcataaaaatcactt 50977417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 11051469 - 11051385
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| |||||||||| ||||| |||||||||||| |||||| |||||||||||| | |||||| |||||| || ||||||    
T  11051469 aaaaggataatttggtcattacacattcaaaatcaatttttattcaaactatccaaacaaca-taactcttaagaaccatttttaa 11051385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 47123370 - 47123439
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaac 301  Q
    ||||||||| ||||| ||||||||||| ||| ||||||||||| |  |||| ||||||||||||||||||    
T  47123370 attatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcacttttaac 47123439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 40229618 - 40229550
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcac 294  Q
    |||||||||| || || |||||||||||||||||||  ||||||||||| || |||||| |||||||||    
T  40229618 ttggtcattacacgttcaaaatcaattttgattcaaattatccaaacaacatcaactcagaagaatcac 40229550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 296
Target Start/End: Original strand, 1199784 - 1199875
Alignment:
Q  206 aaatacaac-aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||| |||||||||  || ||||||| || || ||||||||||||||||||| |||||||||||| || ||  || |||||||||||    
T  1199784 aaatacaactaaaaagatagtttagtcattacacgttcaaaatcaattttgattcaaactatccaaacaacatcaatccacaagaatcactt 1199875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 48510861 - 48510960
Alignment:
Q  202 ttttaaatacaa-caaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| || ||||| ||||  ||| |||||| ||| ||||||||||||||||| ||  |||| ||||||| || || |||||||||||||||||||    
T  48510861 ttttaaatataatcaaaaggatagtttgatcattacacacttaaaatcaattttgatacatactattcaaacaacatcaattcataagaatcacttttaa 48510960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 31933694 - 31933772
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatca 293  Q
    |||| ||||| ||||||| || ||||| |||||||||||||||  ||  ||||||||||| || |||||||||||||||    
T  31933694 aaaaggataatttggtcaatacacattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatca 31933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 12247415 - 12247472
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||||||  | ||||||||| || ||||||||| ||||||||||||    
T  12247415 aaaatcaattttgattcaaattctccaaacaacatcaactcataaaaatcacttttaa 12247472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 15884204 - 15884276
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||| ||||| |||| ||||||||||||||| ||| |||||||||||| || || | |||| ||||||||||    
T  15884204 ttggtaattatgcattcaaaatcaattttgatccaaactatccaaacaacatgaatttataaaaatcactttt 15884276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 13931605 - 13931668
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatca 293  Q
    |||||| | ||| ||||||||||||||||||| |||||||||||| || ||||  |||||||||    
T  13931605 tcattacatattcaaaatcaattttgattcaaactatccaaacaacatcaacttgtaagaatca 13931668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 25061218 - 25061277
Alignment:
Q  240 tttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||||||||||||  ||||||||||  || || | ||||||||||||||||    
T  25061218 tttaaaatcaattttgattcaaattatccaaacatcatcaattgataagaatcactttta 25061277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 26058236 - 26058293
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| || |||||||||||||||| || || ||||| |||| ||||||||    
T  26058236 aaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaa 26058293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 9447533 - 9447585
Alignment:
Q  248 caattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||| |||||| |||||||||||| || |||||  |||||||||||||||    
T  9447533 caattttaattcaaactatccaaacaacatcaactcgaaagaatcacttttaa 9447585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 52966981 - 52966882
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  ||||| |||| |||||||||| ||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||||    
T  52966981 ttttaaatacaattaaaaggataatttggtcattacacatttaaaatcaattttgattcaacctatctaaacaacatcaactcataagaatcacttttaa 52966882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 35425276 - 35425358
Alignment:
Q  214 caaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| ||||| || ||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  35425276 caaaaggataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaatatcaactcataagaatcactt 35425358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 31619045 - 31618964
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| ||||||||| |||||||||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||    
T  31619045 aaaaggataagttgatcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcactt 31618964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 10853420 - 10853340
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||| || ||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  10853420 gataatttggtcaatacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 10853340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 42318256 - 42318355
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  ||||| |||| || |||||| |||||| ||||||||||||||||||| |||||||||| | || |||||||||||||||||||    
T  42318256 tagttttaaatacaattaaaaggataattttgtcattttacattcaaaatcaattttgattcaaactatccaaacgaaatcaactcataagaatcacttt 42318355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 26519618 - 26519692
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |||| ||||||||||||    
T  26519618 ttggtcattttacatttaaaatcaattttgtttcaaactatccaaacaatatcaactaataaaaatcacttttaa 26519692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 53074853 - 53074931
Alignment:
Q  222 taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| |||  |||||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||    
T  53074853 taagttggtctttacgcatttaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaa 53074931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 20813103 - 20813172
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  20813103 gtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactttt 20813172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 25847982 - 25848078
Alignment:
Q  221 ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    |||| |||||||||| |||||||||||||||||| |||||| |||||||||||| |  ||||||||||||||| ||||||  |||||||| |||||||    
T  25847982 ataatttggtcattacacatttaaaatcaatttttattcaa-ctatccaaacaacacaaactcataagaatcatttttaagtgaaggtatccaaacat 25848078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 48189594 - 48189518
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||||||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  48189594 gataatttagtcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcactt 48189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 31619131 - 31619069
Alignment:
Q  155 caacataaatataaatgattatctaaaatgcagagaaaggggtctagttttaaatacaacaaaaag 220  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  31619131 caacataaatataaatgattatctaaaatgt---gaaaggggtctagttttaaatacaacaaaaag 31619069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 38125616 - 38125517
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  ||||| |||| || |||||| |||||| ||||| ||||||||||||| |||||||||| | || |||||||||||||||||||    
T  38125616 tagttttaaatacaattaaaaggataattttgtcattttacattcaaaattaattttgattcaaactatccaaacgaaatcaactcataagaatcacttt 38125517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 10334067 - 10334165
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||  ||||| |||  |||||||||||| ||| ||||||||||||||||||| ||||||||||||  | ||||||||||||| |||||||    
T  10334067 ttttaaatacaattaaaaggatagtttggtcattataaattcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaattactttta 10334165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 30811674 - 30811608
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  30811674 tcattacacattcaaaatcaattttgattcaaactatccaaacaatatcaagtcataagaatcactt 30811608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 38172454 - 38172384
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||||||| ||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  38172454 ttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcactt 38172384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 53179792 - 53179876
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||| || |||||||||||| || ||||||||| ||||||||||||    
T  53179792 aaaaggataatttggtcattgtacattcaaaatcaattttgatttaaactatccaaacaa-atcaactcataaaaatcacttttaa 53179876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 23496251 - 23496351
Alignment:
Q  200 agttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  |||| ||||  || ||||||||||||| ||||||||||||||||||| |||||||||||| || ||| |  |||||||||||||    
T  23496251 agttttaaatacaattaaaatgatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccgcaagaatcactttt 23496350  T
Q  299 a 299  Q
    |    
T  23496351 a 23496351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 15511519 - 15511448
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||  |||| |||||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||    
T  15511519 gtcattacgcattcaaaatcaatttttattcaaactatccaaacaatatcaactcataaaaatcacttttaa 15511448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 22736930 - 22737009
Alignment:
Q  221 ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||| |||||| ||||| ||||||||||||||||||| | |||| ||||| |||||||||||| ||||||||||||    
T  22736930 ataatttgttcattacacattcaaaatcaattttgattcaaaccatcccaacaacattaactcataataatcacttttaa 22737009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 31084137 - 31084236
Alignment:
Q  202 ttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||  |||| ||||  |||||||||| | ||| |||||||||| |||||||| ||||||||| ||||| || |||||||||||||||||||    
T  31084137 ttttaaatacaattaaaatgatagtttggtcattacatattcaaaatcaattatgattcaaactatccaaataatatcaagtcataagaatcacttttaa 31084236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 16246237 - 16246171
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||||||||    
T  16246237 tcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcctaagaatcactt 16246171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 44224705 - 44224790
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| |||||||||  ||||| |||||||||||||| | ||  ||||||||||| || ||||||||||||||||||||||    
T  44224705 aaaaggataatttggtcattgcacattcaaaatcaattttgactaaaattatccaaacaacatcaactcataagaatcacttttaa 44224790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 8424882 - 8424806
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||| | ||||||||||||||||||| |||| ||||||| || ||||||||||||||||||    
T  8424882 gataatttagtcattacacactcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcactt 8424806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 35930667 - 35930762
Alignment:
Q  202 ttttaaatacaacaaaaa-gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||||  |||| ||||  |||||||||| ||||| |||||||||||||||| || | ||||||||| ||| ||||||||||||| ||||    
T  35930667 ttttaaatacaattaaaatgatattttggtcattacacattcaaaatcaattttgatttaaaccatccaaacattatcaactcataagaatgactt 35930762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 42475663 - 42475754
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaaca 317  Q
    ||||| ||||||||| ||||| ||||||||||||||| ||||||||||| |  || ||||||||||| ||||||||  |  |||||||||||    
T  42475663 ttggtaattatacatctaaaagcaattttgattcaatgtatccaaacaacaacaattcataagaatcgcttttaacaaagtgtattcaaaca 42475754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 38340732 - 38340834
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||| ||| || |||||| |||| ||||||| || |||||||||||||||||| |||||| ||||||||||||  | |||| |||| ||| |||||    
T  38340732 tagttttatatataataaaaaggataatttggtcactacacatttaaaatcaatttttattcaaactatccaaacaacgtcaacttataaaaattacttt 38340831  T
Q  298 taa 300  Q
    |||    
T  38340832 taa 38340834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 3348186 - 3348271
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||| || ||||| |||||||||||||||  ||  ||||||||||| || ||||||||||||| ||||||||    
T  3348186 aaaaggataatttggtcaatacacattcaaaatcaattttgatataaaatatccaaacaacatcaactcataagaattacttttaa 3348271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 45423915 - 45423842
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| ||| |||||  ||||||||||||||||||| |||||||||||| || || | ||||||||||||||||    
T  45423915 ttggtaattgtacatccaaaatcaattttgattcaagctatccaaacaacatgaattgataagaatcactttta 45423842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 37698536 - 37698488
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  37698536 ttggtaattatacatgtaaaatcaattttgattcaaactatccaaacaa 37698488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 40244068 - 40244120
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatatt 278  Q
    ||||| ||||||||||||||| ||||||||||| || ||||||||||||||||    
T  40244068 ttggtaattatacatttaaaaacaattttgattaaaactatccaaacaatatt 40244120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 44939567 - 44939491
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| ||||| |||||||||| || |||| ||||||| || ||||||||||||||||||    
T  44939567 gataatttagtcattagacattcaaaattaattttgattaaaactattcaaacaacatcaactcataagaatcactt 44939491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 21224939 - 21225018
Alignment:
Q  221 ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| |||||||||||||| | | ||||||||||||||||| ||||| |||| | || ||||| |||||||| |||||||    
T  21224939 ataatttggtcattatacactcataatcaattttgattcaaactatcaaaacgacatcaactcgtaagaatcgcttttaa 21225018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 31619277 - 31619208
Alignment:
Q  7 aaattaatattattttaaagtgaatttgtgaaccaaataaaattgaagttaatagtataatatccatttctctg 80  Q
    |||||||||||  |||||||||||||| |||||||||| ||||| |||||||| ||||||||| ||||||||||    
T  31619277 aaattaatatt--tttaaagtgaatttttgaaccaaat-aaatttaagttaat-gtataatatgcatttctctg 31619208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 32357482 - 32357539
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| ||||||  || |||||||| || ||| ||||||||||||||||||    
T  32357482 aaaatcaattttaattcaaagtacccaaacaacatcaacacataagaatcacttttaa 32357539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 50664702 - 50664782
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| ||||| ||| |||||| ||||| |||||||||||| ||| || ||||| |||||| | |||||| ||||||||||||    
T  50664702 aaaaggataatttgatcattacacattcaaaatcaattttaatttaaactatctaaacaaca-taactcttaagaatcactt 50664782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 30810078 - 30810018
Alignment:
Q  240 tttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||  ||||||||||||| |||||||||||  || || | |||||||||||||||||    
T  30810078 tttaaaagtaattttgattcaaactatccaaacatcatcaatttataagaatcacttttaa 30810018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 28261246 - 28261327
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| || ||||||||||||||||||    
T  28261246 aaaaggataagttggtcattatacatttaaaattaattttgattcaaactattcaaacaacatcaactcataagaatcactt 28261327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 7472824 - 7472744
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  7472824 gataatttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 7472744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 2213469 - 2213543
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||    
T  2213469 ttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaa 2213543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 28127432 - 28127358
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||    
T  28127432 ttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaa 28127358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 300
Target Start/End: Original strand, 28641540 - 28641679
Alignment:
Q  157 acataaatataaatgattatctaaaatgcagagaaaggggtctagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttg 255  Q
    |||||||| ||||| ||||||||||||| ||||| |    |||| ||||||||||||  ||||| |||| |||||||||| ||||||||||||||||||     
T  28641540 acataaatttaaataattatctaaaatg-agagata----tctaattttaaatacaattaaaaggataatttggtcattacacatttaaaatcaatttta 28641634  T
Q  256 attcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||  ||||||||||| || |||| |||| ||||||||||||    
T  28641635 attcaacatatccaaacaacatcaacttataataatcacttttaa 28641679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 23358221 - 23358295
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||    
T  23358221 ttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacattaactcatcacaatcacttttaa 23358295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 31562823 - 31562755
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  31562823 attacacattcaaaatcaattttgattcaaattatccaaacaatataaactcataagaatcacttttaa 31562755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 222 - 318
Target Start/End: Original strand, 32501945 - 32502041
Alignment:
Q  222 taagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||||||||||||  |||||||||||||||||||||||| ||| ||||||||||| ||||| ||| ||| ||||||||  ||| |||| |||||||    
T  32501945 taagttggtcattacccatttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaattgaatgtatccaaacat 32502041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 8170270 - 8170344
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcac 294  Q
    ||||| || ||||||||||||| |||||||||||| |||||| |||||||||||| || ||||||||||||||||    
T  8170270 gataatttagtcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcac 8170344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 9988646 - 9988572
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||||| |||||||||||| |||||| |||||||||||| || |||||||| |||||||||||||    
T  9988646 ttggtcattacacattcaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaa 9988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 5916413 - 5916312
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||||||| ||||| ||||||||||||||||||| |||||||||||| || |||||| | |||||||||||    
T  5916413 agttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcactttt 5916314  T
Q  299 aa 300  Q
    ||    
T  5916313 aa 5916312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 36312213 - 36312314
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||||||| ||||| ||||||||||||||||||| |||||||||||| || |||||| | |||||||||||    
T  36312213 agttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcactttt 36312312  T
Q  299 aa 300  Q
    ||    
T  36312313 aa 36312314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 2234899 - 2234962
Alignment:
Q  235 atacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  2234899 atacatttaaaattaattttgattcaaactatccaaacaaca-taactcataagaatcactttta 2234962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 14821120 - 14821196
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| |||||||||||||||||||  ||||||||||| || ||||||||||||||||||    
T  14821120 gataatttagtcattagacattcaaaatcaattttgattcaaaatatccaaacaacatcaactcataagaatcactt 14821196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 42516131 - 42516048
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    |||||||||| ||||| |||||||||| |||||||||||| |||||| |||||||||||| || |||||  |||||||| ||||    
T  42516131 aaaaagataatttggttattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcgaaagaatcattttt 42516048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 39141597 - 39141540
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||    
T  39141597 aaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaa 39141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 25940392 - 25940316
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| |||||||||||| ||| ||||||||||||||||||| || ||||||||| || | ||||||| ||||||||    
T  25940392 gataatttggtcattatatattcaaaatcaattttgattcaaactgtccaaacaacatcatctcataataatcactt 25940316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 42089671 - 42089603
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| ||||| || ||||||||| || ||||||||||| || ||||||||||||||||||||||    
T  42089671 attatacatctaaaagcagttttgattcgatttatccaaacaacatcaactcataagaatcacttttaa 42089603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 26208099 - 26208000
Alignment:
Q  202 ttttaaatacaa-caaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| ||||| ||||  ||||||||| |||||||||||||||||||||||||    |||||||||| || ||||  ||||||||| ||||||    
T  26208099 ttttaaatacaatcaaaaggatagtttggtcattgtacatttaaaatcaattttgattcatataatccaaacaacatcaacttgtaagaatcaattttaa 26208000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 44619206 - 44619132
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||| |||||| ||||| |||||| |||||||||||| || ||||||||| ||||| ||||||    
T  44619206 ttggtcattttacattcaaaatcgattttaattcaaactatccaaacaacatcaactcataataatcatttttaa 44619132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 3552991 - 3552921
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| |||| |||||||| ||||||||||||||||  |||||||||||||| || | |||||||| ||||    
T  3552991 ttggtaattacacatttaagatcaattttgattcaaattatccaaacaatatgaaatgataagaattactt 3552921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 1945166 - 1945110
Alignment:
Q  244 aaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||||| |||||||||||| || ||| || | |||||||||||||    
T  1945166 aaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaa 1945110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 7295502 - 7295418
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||| ||||| | |||||||||| ||| |||||||| ||||| | || |||||||||||| || ||||||| | |||||||||||    
T  7295502 aaaaggataattcggtcattatatattcaaaatcaagtttgacttaaactatccaaacaacatcaactcatgataatcactttta 7295418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 7296087 - 7296191
Alignment:
Q  196 gtctagttttaaatacaa-caaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcac 294  Q
    ||||||| |||||| ||| ||||| ||||| | |||||||||| ||| |||||||||||||| | || ||||||||| || || || |||| | ||||||    
T  7296087 gtctagtgttaaatgcaatcaaaaggataattcggtcattatatattcaaaatcaattttgacttaaactatccaaataacatcaagtcatgataatcac 7296186  T
Q  295 tttta 299  Q
    |||||    
T  7296187 tttta 7296191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 39106819 - 39106765
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||| ||||||||| || |||||||||||||||||||||||  |||| ||||||    
T  39106819 gataatttggtcattgtatatttaaaatcaattttgattcaaattatctaaacaa 39106765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 3602604 - 3602531
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| ||||||||   |||||||||||| |||||| |||||||||||| || || | |||| |||||||||||    
T  3602604 ttggtaattatacaccaaaaatcaattttaattcaaactatccaaacaacatgaattaataaaaatcactttta 3602531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 16467049 - 16467122
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| |||||||||  ||||| |||||||||  || |||||||||| | || ||| |||||||||||||||||    
T  16467049 ttggtaattatacatcaaaaattaattttgatctaaactatccaaactacatcaacccataagaatcactttta 16467122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 43436409 - 43436352
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||| || |||||||||||||||| || || ||||| |||| ||||||||    
T  43436409 aaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaa 43436352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 3667822 - 3667896
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||    
T  3667822 ttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaa 3667896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 40791212 - 40791139
Alignment:
Q  227 tggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  40791212 tggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaa 40791139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 42146277 - 42146350
Alignment:
Q  227 tggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  42146277 tggtcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaa 42146350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 32454499 - 32454579
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||||| |||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  32454499 gataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 32454579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 35760157 - 35760231
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||| ||||||    
T  35760157 ttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcagttttaa 35760231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 41740737 - 41740645
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||||||| |||||| |||||||||||||||| || |||||||||||| || ||||||||| |||||||||||| | |  ||||||||||||    
T  41740737 ttggtcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaatcacttttaaacaagtgtattcaaacat 41740645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 27021085 - 27021171
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatc-tatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||  ||||||||||||||||    
T  27021085 aaaaggataatttcgtcattatacattcaaaatcaattttgattcaatcttatccaaacaacatcaacttctaagaatcacttttaa 27021171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 3060372 - 3060296
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    ||||| ||||||| || ||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  3060372 gataatttggtcaatacacattcaaaatcaattttgattcaaactatccaaacaaca-taactcataagaatcacttt 3060296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 22482130 - 22482231
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||||||||||||| ||||||||||||||||||| |||||||||||| || ||| || | |||||||||||    
T  22482130 agttttaaatacaattaaaaggatagtttagtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttt 22482229  T
Q  299 aa 300  Q
    ||    
T  22482230 aa 22482231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 2430446 - 2430370
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||| | ||||||||||||||||||| |||||||||||| || ||||||||||||||||||    
T  2430446 gataatttagtcattacacactcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcactt 2430370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 40885167 - 40885253
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaa-tcacttttaa 300  Q
    |||| ||||| ||| |||||| | ||| ||||||||||||||||||| ||||||||||||||| ||||||||| || ||||||||||    
T  40885167 aaaaggataatttgatcattacatattcaaaatcaattttgattcaaactatccaaacaatatcaactcataaaaactcacttttaa 40885253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 13253209 - 13253152
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||    
T  13253209 aaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttttaa 13253152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 9275639 - 9275555
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||||||| |||||||||| ||||| |||||||| ||| ||||||   |||||||||| || ||||||||||||||| |||||    
T  9275639 aaaaagataatttggtcattacacattcaaaatcaagtttcattcaaatcatccaaacaacatcaactcataagaatcaatttta 9275555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 296
Target Start/End: Original strand, 41834835 - 41834930
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||||  ||||| |||| |||||||||  ||||| |||||||||||| |||||| |||||||||||| || || || ||||||||||||    
T  41834835 ttttaaatacaattaaaaggataatttggtcattgcacattcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcactt 41834930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 7714897 - 7714975
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatca 293  Q
    |||| ||||| || |||||||||| || |||||||||||| |||||| |||||||||||| || |||| ||||||||||    
T  7714897 aaaaggataatttagtcattatactttcaaaatcaattttaattcaaactatccaaacaacatcaacttataagaatca 7714975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 28869674 - 28869573
Alignment:
Q  199 tagttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||||||||||||||  ||||| |||| |||||||||| ||| |  ||||| ||||| | |||| |||||||||||| || |||||||||||||||||||    
T  28869674 tagttttaaatacaattaaaaggataatttggtcattacacactcgaaatctatttt-actcaaactatccaaacaacatcaactcataagaatcacttt 28869576  T
Q  298 taa 300  Q
    |||    
T  28869575 taa 28869573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 33954056 - 33953975
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||| ||||| || ||||||| ||||| ||||| ||||||||||||| |||||| ||||| || ||||||| ||||||||||    
T  33954056 aaaaggataatttagtcattacacattcaaaattaattttgattcaaactatccgaacaacatcaactcatcagaatcactt 33953975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 7386062 - 7386002
Alignment:
Q  240 tttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||| ||||||||||| ||  ||||||||||| || ||||||||||||||||||||||    
T  7386062 tttaaaagcaattttgatttaaattatccaaacaacatcaactcataagaatcacttttaa 7386002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 318
Target Start/End: Complemental strand, 34107091 - 34106999
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaaccgaaggtattcaaacat 318  Q
    ||||| ||||| || ||||||  ||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||  ||| ||||| ||||||    
T  34107091 ttggtaattatgcacttaaaagtaattttgattcaacctattcaaacaacattaattcataagaattacttttaaatgaatgtatttaaacat 34106999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 298
Target Start/End: Original strand, 32030659 - 32030754
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||| ||||| |||  || ||||||| || || ||||||||||||||||||| |||| ||||||| || ||  ||||||||||||||||    
T  32030659 ttttaaatacaactaaaaggatagtttagtcattacaccttcaaaatcaattttgattcaaactattcaaacaacatcaa--cataagaatcactttt 32030754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 300
Target Start/End: Complemental strand, 40495512 - 40495428
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||| ||||| ||||||  ||||||||||||||| || |||| ||||||| || ||||||||| ||||||||||||    
T  40495512 aaaaggataatttgatcattgtacattccaaatcaattttgatttaaactattcaaacaa-atcaactcataaaaatcacttttaa 40495428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 5710511 - 5710459
Alignment:
Q  244 aaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||||||| |||||| |||||||||||||||  |||||||| ||||||||    
T  5710511 aaatcaatttttattcaaactatccaaacaatatctactcataaaaatcactt 5710459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 4292120 - 4292187
Alignment:
Q  229 gtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||||| ||||| ||||| |||||||||||||  |||||||||||||| |||  | |||||||||||    
T  4292120 gtcattacacattcaaaattaattttgattcaaattatccaaacaatatcaaccaacaagaatcactt 4292187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 16158605 - 16158535
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||| ||||| |||||||||||||||||||   ||||||| || || || || ||||||||||||||||    
T  16158605 tcattacacattcaaaatcaattttgattcaaatcatccaaagaacatcaattcctaagaatcacttttaa 16158535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 7178746 - 7178819
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| ||||||| || |||| |||||||||||||| ||| |||||||| || || | |||||||||| |||||    
T  7178746 ttggtaattatactttcaaaagcaattttgattcaaactacccaaacaacataaattgataagaatcaatttta 7178819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 10058059 - 10058112
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    |||||||||||| |||||| |||||||||||| || || || ||||||||||||    
T  10058059 aaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcactt 10058112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 27020918 - 27020983
Alignment:
Q  7 aaattaatattattttaaagtgaatttgtgaaccaaataaaattgaagttaatagtataatatccattt 75  Q
    |||||||||| |||||| | |||||||||||||| |||||||||  |||  ||||||||||||||||||    
T  27020918 aaattaatatcattttatactgaatttgtgaacc-aataaaatttcagt--atagtataatatccattt 27020983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 3747734 - 3747686
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||| ||| ||||| ||||||||||||||||| || ||||||||||||    
T  3747734 ttggtaattttacatgtaaaatcaattttgattaaaactatccaaacaa 3747686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 8049181 - 8049121
Alignment:
Q  240 tttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||| ||||||||||| ||   |||||||||| |  ||||||||||||||||||||||    
T  8049181 tttaaaagcaattttgatttaaatcatccaaacaacaacaactcataagaatcacttttaa 8049121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 13676477 - 13676541
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaa 290  Q
    ||||| ||||| || |||||  ||||||||||||||||||||| ||||| ||||| | |||||||    
T  13676477 ttggtaattatgcacttaaacacaattttgattcaatctatccgaacaacattaatttataagaa 13676541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 39988097 - 39988037
Alignment:
Q  240 tttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||  |||||||||| ||   |||||||||| || ||||||||||||||||||||||    
T  39988097 tttaaaagaaattttgatttaaatcatccaaacaacatcaactcataagaatcacttttaa 39988037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 41959446 - 41959502
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    |||||||||| |  ||||| ||||  |||||| ||||||||||||||||||||||||    
T  41959446 aaaatcaattctatttcaaactatgaaaacaacattaactcataagaatcactttta 41959502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 13739154 - 13739234
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||||| |||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  13739154 gataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 13739234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 13744654 - 13744734
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||| ||||||||| |||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  13744654 gataatttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaa 13744734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 21455812 - 21455910
Alignment:
Q  203 tttaaatacaac-aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||  |||||||||| ||  |||||| ||||||||||| ||||||||||||| |||| ||||||| |||||||||| ||||||||||||||    
T  21455812 tttaaatacaattaaaaagataatttaatcattacacatttaaaattaattttgattcaaactatgcaaacaacattaactcatgagaatcacttttaa 21455910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 29409398 - 29409324
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||| ||||||    
T  29409398 ttggtcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaa 29409324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 33899177 - 33899079
Alignment:
Q  202 ttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||||||||||  ||||| |||  |||||||||| ||||| |||||||||||||||| || | ||||||||| |||||||||||||||||||||||||    
T  33899177 ttttaaatacaattaaaaggatattttggtcattacacattcaaaatcaattttgatttaaaccatccaaacattattaactcataagaatcactttta 33899079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 10826045 - 10826119
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||  | ||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  10826045 ttggtcattccatatttaaaattaattttgattcaaactatccaaacaaaatcaactcataagaatcacttttaa 10826119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 16442497 - 16442423
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||||||| ||||| |||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||    
T  16442497 ttggtcattacacattcaaaatcaattttcattcaaattatccaaacaatatcaactcatatgaatcacttttaa 16442423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 6208215 - 6208136
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| || ||||||| ||||| ||||| ||||||||||||| ||||| |||||| || |||||||||||||||||||||    
T  6208215 gataatttagtcattagacattcaaaattaattttgattcaaactatctaaacaacatcaactcataagaatcactttta 6208136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 7215533 - 7215603
Alignment:
Q  230 tcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||||| | ||||||||| |||||||||||||| ||| ||||||| |||||||||| ||||||||||||||    
T  7215533 tcattacatatttaaaattaattttgattcaatttatgcaaacaacattaactcatgagaatcacttttaa 7215603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 16548066 - 16548167
Alignment:
Q  200 agttttaaatacaacaaaaag-ataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttt 298  Q
    ||||||||||||||  ||||| |||  || ||||||| ||||| ||||||||||||||||||| |||||||||||| || ||| || | |||||||||||    
T  16548066 agttttaaatacaattaaaaggatagtttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcactttt 16548165  T
Q  299 aa 300  Q
    ||    
T  16548166 aa 16548167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 31132435 - 31132492
Alignment:
Q  243 aaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    ||||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||    
T  31132435 aaaatcaattttgattcaaactatccaaacaacatcaacccataagaatcacttttaa 31132492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 17830171 - 17830097
Alignment:
Q  200 agttttaaatacaacaaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||||||||||||  ||| ||||  |  ||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  17830171 agttttaaatacaattaaacgatagttcagtcattacacattcaaaatcaattttgattcaaactatccaaacaa 17830097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 699512 - 699584
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
    ||||| ||| || ||| |||||| |||||||||||| |||||| ||||| ||||||| |||||||| |||||||    
T  699512 ttggtaattttatattcaaaatcgattttgattcaaactatcc-aacaacattaacttataagaattactttta 699584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 300
Target Start/End: Original strand, 8392 - 8477
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttttaa 300  Q
    |||| ||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| || ||||||||| ||||| ||||||    
T  8392 aaaaggataatttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcatttttaa 8477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 9054 - 9136
Alignment:
Q  215 aaaaagataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcacttt 297  Q
    |||| ||||| || ||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||||||||||||||||||    
T  9054 aaaaggataatttagtcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataagaatcacttt 9136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 29275 - 29199
Alignment:
Q  220 gataagttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactt 296  Q
    ||||| || ||||||| ||||| ||||||||||||||||||| |||||||||||| || || |||||||||| ||||    
T  29275 gataatttagtcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaattcataagaataactt 29199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 9299 - 9257
Alignment:
Q  232 attatacatttaaaatcaattttgattcaatctatccaaacaa 274  Q
    ||||||||||||||||||||||||||  || ||||||||||||    
T  9299 attatacatttaaaatcaattttgatcaaaactatccaaacaa 9257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 6004 - 5943
Alignment:
Q  200 agttttaaatacaacaaaaagataagttggtcattatacatttaaaatcaattttgattcaa 261  Q
    ||||||||||||||  ||| ||||  || ||||||| ||||| |||||||||||||||||||    
T  6004 agttttaaatacaattaaaggatagtttagtcattacacattcaaaatcaattttgattcaa 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 46717 - 46790
Alignment:
Q  226 ttggtcattatacatttaaaatcaattttgattcaatctatccaaacaatattaactcataagaatcactttta 299  Q
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T  46717 ttggtaattatacatccaaaatcaattttgatttgaactatccaaacaacatgaattgataaaaatcactttta 46790  T

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