View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-5 (Length: 554)
Name: NF4778-Insertion-5
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 4386315 - 4386254
Alignment:
| Q |
8 |
acaaggaggtacccaaagagaaaaaggtaaagattattgttgtcaggttaaaaaagcatggt |
69 |
Q |
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| T |
4386315 |
acaaggaggtacccaaagagaaaaaggtaaagattattgctctcaagttaaaaaagcatggt |
4386254 |
T |
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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 28233 - 28181
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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| T |
28233 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
28181 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 87856 - 87908
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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| T |
87856 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
87908 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 11712710 - 11712762
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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| T |
11712710 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
11712762 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 16776479 - 16776427
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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| T |
16776479 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
16776427 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 5382051 - 5381999
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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| T |
5382051 |
gaagaatacactagagattttgagaagttaatgatgaagtgcgacattcatga |
5381999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 13721818 - 13721766
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||| |
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| T |
13721818 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
13721766 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 14475581 - 14475529
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||| |
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| T |
14475581 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
14475529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 42376728 - 42376780
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||| |
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| T |
42376728 |
gaagaatacactagagaatttgagaagttaatgatgaagtgcgacattcatga |
42376780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 2795831 - 2795779
Alignment:
| Q |
241 |
gaagaatacactagagagtttgaaaagcttatgatgaagtgtgacattcatga |
293 |
Q |
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|||||||||||| |||| ||||| ||| | ||||||||||| ||||||||||| |
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| T |
2795831 |
gaagaatacactggagaatttgagaagttaatgatgaagtgcgacattcatga |
2795779 |
T |
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