View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778-Insertion-6 (Length: 494)
Name: NF4778-Insertion-6
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 13168136 - 13167779
Alignment:
| Q |
8 |
taaggtcccttttttcaggacatcaaatatttgtgatgttgcttagtagtatataaaaatgaacattttatattttggtgacccaatttcattgataaac |
107 |
Q |
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| T |
13168136 |
taaggtcccttttttcaggacatcaaatatttgtgatgttgcttagtagtatataaaaatgaacattttatattttggtgacccaatttcattgataaac |
13168037 |
T |
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| Q |
108 |
aaccttgagaatctactaaattatacatttatgttctcaaaacatggaataaacttagaagtaatttacgagatagattattgaaaagcgtccctaaaag |
207 |
Q |
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| T |
13168036 |
aaccttgagaatctactaaattatacatttatgttctcaaaacatggaataaacttagaagtaatttacgatatagattattgataagtgtccctaaaag |
13167937 |
T |
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| Q |
208 |
agatatgtttattgtgactgtgagtggtcctaatgannnnnnnaatagccacttcacatcatacattcattattttttaatggggaagaggaagatagac |
307 |
Q |
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| T |
13167936 |
agatatgtttattgtgactgtgagtggtcgtaatgatttttttaatagccacttcacatcatacattcattattttttaatggggaagaggaagatagac |
13167837 |
T |
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| Q |
308 |
atctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
365 |
Q |
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| T |
13167836 |
atttacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
13167779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 382 - 494
Target Start/End: Complemental strand, 13167753 - 13167640
Alignment:
| Q |
382 |
aacgagggccatt-agaaggttgaaattatattaaacctatgccctaatccagctcatgcctaagttaattcactaatgtaaacagaacttacagctgca |
480 |
Q |
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| T |
13167753 |
aacgagggccatttagaaggttgaaattatattaaacctatgccctaatccagctcatgcctaagttaattcactaatgtaaacagaacttacagctgca |
13167654 |
T |
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| Q |
481 |
cgtatataatatta |
494 |
Q |
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| T |
13167653 |
catatataatatta |
13167640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 390 - 494
Target Start/End: Complemental strand, 12850290 - 12850185
Alignment:
| Q |
390 |
ccattagaaggttgaaatt-atattaaacctatgccctaatccagctcatgcctaagttaattcactaatgtaaacagaacttacagctgcacgtatata |
488 |
Q |
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| T |
12850290 |
ccattagaaggttgaaatttatgtaaaacctatgacctaatccagctcatgcctaagttaattcactactgtaaacagaacttacagctgcacatatata |
12850191 |
T |
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| Q |
489 |
atatta |
494 |
Q |
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|||||| |
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| T |
12850190 |
atatta |
12850185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 12850540 - 12850397
Alignment:
| Q |
74 |
tttatattttggtgacccaatttcattgataaacaaccttgagaatctactaaattatacatttatgttctcaaaacatgga--ataaacttagaagtaa |
171 |
Q |
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||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| ||||||||||| ||||| |||| |||||||||||||||| |
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| T |
12850540 |
tttatattttggtgacc-aatttctttgatgaacaaccttgagaatccactaaattataaatttatgttctgaaaacttggaatataaacttagaagtaa |
12850442 |
T |
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| Q |
172 |
tttacgagatagattattgaaaagcgtccctaaaagagatatgttt |
217 |
Q |
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| T |
12850441 |
-ttacgagataaattattgaagagtgtctttaaaagagatatgttt |
12850397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 365
Target Start/End: Complemental strand, 12850399 - 12850317
Alignment:
| Q |
282 |
ttttaatggggaagaggaagatagacatctacttgtttatttagaagaattgatcgaaagagtttcttgggttcacattagaag |
365 |
Q |
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| T |
12850399 |
ttttaacggggatgaggaagataaactt-tgcttgtttatttagaagaattgatcaaaagagtttcatgtatttacattagaag |
12850317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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