View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4778-Insertion-7 (Length: 465)
Name: NF4778-Insertion-7
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778-Insertion-7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 7540274 - 7540723
Alignment:
| Q |
8 |
gtgacatgggtttatagcacagagatatttccactaaggttgagagcacaaggacttggggtttgtgtgattatgaatagaattactaatgtggcagtgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7540274 |
gtgacatgggtttatagcacagagatatttccactaaggttgagagcacaaggacttggggtttgtgtgattatgaatagaattactaatgtggcagtgg |
7540373 |
T |
|
| Q |
108 |
ttactagttttatttcaatttataaaactataacattgggtggaactttctttttgtttgttggtacaaatgttttgggttggtggttttactattcttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7540374 |
ttactagttttatttcaatttataaaactataacattgggtggaactttctttttgtttgttggtacaaatgttttgggttggtggttttactattcttt |
7540473 |
T |
|
| Q |
208 |
cttgcctgaaactaaaggaagatcattagaagatatggaaactatctttgggaaaaattccaactctgaggtacaaatgaagtgtggaagcaacaatgca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7540474 |
cttgcctgaaactaaaggaagatcattagaagatatggaaactatctttgggaaaaattccaactctgaggtacaaatgaagtatggaagcaacaatgca |
7540573 |
T |
|
| Q |
308 |
tagttttggataatcacacttttttcctttaaaatnnnnnnnttaaggtagggatgttgctccggtctaaagcagaaaaactttctaactcgatgagtac |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
7540574 |
tagttttggataatcacacttttttcctttaaaataaaaaaattaaggtagggatgttgctccggtctaaggcagaaa--------aactcagtgagtac |
7540665 |
T |
|
| Q |
408 |
ttacgnnnnnnnttacatttacctcgttgtatataataactaatgggaacttagctac |
465 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7540666 |
ttacgaagaaaattacatttacctcgttgtatataataactaatggaaacttagctac |
7540723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 33161361 - 33161249
Alignment:
| Q |
115 |
ttttatttcaatttataaaactataacattgggtggaactttctttttgtttgttggtacaaatgttttgggttggtggttttactattctttcttgcct |
214 |
Q |
| |
|
|||||||||||| |||||| |||| ||| | ||||||| ||| || |||||| ||||| | |||||| | ||||| ||||| ||| | |||| | ||| |
|
|
| T |
33161361 |
ttttatttcaatctataaagctatcacaataggtggaagttttttcatgtttgctggtatatctgttttagcttggttgtttttctactttttccttcct |
33161262 |
T |
|
| Q |
215 |
gaaactaaaggaa |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33161261 |
gaaactaaaggaa |
33161249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University