View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_24 (Length: 288)
Name: NF4778_high_24
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 32728862 - 32728573
Alignment:
| Q |
1 |
aaatctagcagctcctcttatccattggttggagannnnnnnnngcaagaaatctcaattattca-----------ataaagttgaaaaccttctatagt |
89 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32728862 |
aaatctagcagctcctcttatccattggttggagatttttttatgcaagaaatctcaattattcattcattattcaataaagttgaaaaccttctatagt |
32728763 |
T |
|
| Q |
90 |
ccttcttctaaagaaagcaaaattggaacgtatttatttaatgatagaaataattgagggacaaagttgggtgtgttatactttttcttcacacattctt |
189 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728762 |
ccttcttctaaagaaagcaaaattggaacgtatttatttaatgatagaaataattgagggacaaagttgggtgtgttatactttttcttcacacattctt |
32728663 |
T |
|
| Q |
190 |
cta---ctaccaaagtagctctaaaatgtctatattaaggacccacttgcttgcaaagctctatattctcaaacccacttatttttatta |
276 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728662 |
ctactactaccaaagtagctctaaaatgtctatattaaggacccacttgcttgcaaagctctatattctcaaacccacttatttttatta |
32728573 |
T |
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