View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_25 (Length: 286)
Name: NF4778_high_25
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 32727995 - 32728254
Alignment:
| Q |
18 |
ttaataatcatgttccaaagctttccataaatggatgatctgtgacactgctggaagataagccagtgttttcgtttgtcatttagctttctttgttctt |
117 |
Q |
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| T |
32727995 |
ttaataatcgtgttccaaagctttccataaatggatgatctgtgacactgctggaagataagccagtgttttcgtttgtcatttagctttctttgttctt |
32728094 |
T |
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| Q |
118 |
ggtgattcaggaagaagaggtgtatatatctggcactcttgagttaatgatttctcttactatgattggtcactgtnnnnnnntctaggtatcaacttca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
32728095 |
ggtgattcaggaagaagaggtgtatatatctggcactcttgagttaatgatttctctacctatgattggtcactgtgggggggtctaggtatcaacttca |
32728194 |
T |
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| Q |
218 |
aaatattttatgcttgctgaattgggtattgagatatgtccacaatgtgttaactcattg |
277 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728195 |
aaatattatatgcttgctgaattgggtattgagatatgtccacaatgtgttaactcattg |
32728254 |
T |
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