View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_28 (Length: 268)
Name: NF4778_high_28
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 10303480 - 10303222
Alignment:
| Q |
1 |
caaatgaagttgtaaacgactttgaagatacccaaagaactttcactgataacctttctttcctctgattattggttatagaagataagaattagatgcc |
100 |
Q |
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| T |
10303480 |
caaatgaagttgtaaacgactttgaagatacccaaagaactttcactgataacctttctttcctatgattattggttatagaagataagaattagatgcc |
10303381 |
T |
|
| Q |
101 |
atttgtccaccttataatcagagtttcaatagtatgcgtattcttgctgaggataattcttggcctatatacttctagattatttcaataccacaatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
10303380 |
atttgtccaccttataatcagagtttcaatagtatgcgtattcttgctgaggataattcatggcctatatacttctagattatttcaatattacaatttt |
10303281 |
T |
|
| Q |
201 |
ggtgcgtaaatcgggtatcttcagcgcgcaactgaggaaattaatccttcgagtattat |
259 |
Q |
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| T |
10303280 |
ggtgcgtaaaccgagcatcttcagcatgcaactgaggaaattaatcccttgagtattat |
10303222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 42741790 - 42741842
Alignment:
| Q |
207 |
taaatcgggtatcttcagcgcgcaactgaggaaattaatccttcgagtattat |
259 |
Q |
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| T |
42741790 |
taaatcgggtatcctccgcgcgcaactgcagagattaatccctcgagtattat |
42741842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 35774743 - 35774695
Alignment:
| Q |
209 |
aatcgggtatcttcagcgcgcaactgaggaaattaatccttcgagtatt |
257 |
Q |
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|||||||||||||| ||| ||||||||||| |||||| | ||||||||| |
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| T |
35774743 |
aatcgggtatcttccgcgtgcaactgaggagattaattcatcgagtatt |
35774695 |
T |
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