View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_29 (Length: 268)
Name: NF4778_high_29
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 13881979 - 13882209
Alignment:
| Q |
19 |
gtacgtgctttgccaatggcttcacgtttagaaaacggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttca |
118 |
Q |
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| T |
13881979 |
gtacatgctttgccaatggcttcacgtttagaaaatggcaatgacgttccatctccttcaacttcatgcgcattatccattttcatcagcttcaccttca |
13882078 |
T |
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| Q |
119 |
ctttcagccttattatcatgttctgctgcttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtc |
218 |
Q |
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| T |
13882079 |
ctttcagccttattatcatg---------ttctgcatcctcgcaccatcaatagatttgcttccagaaacatcagcatttgcagaagtattttcgctgtc |
13882169 |
T |
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| Q |
219 |
ctccaatgacctctgaggactttcttccacttcctcatca |
258 |
Q |
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| T |
13882170 |
ctccaatgacctctgaggactttcttccccttcatcatca |
13882209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 260
Target Start/End: Original strand, 13883806 - 13884020
Alignment:
| Q |
50 |
aaaacggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttctgctgctt |
149 |
Q |
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| T |
13883806 |
aaaatggcaataactttccatcttcttcaacatcatgcgcatcagccatcg-cttcagcttcacctccactttcagccttattatcatgttctccttcaa |
13883904 |
T |
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| Q |
150 |
ctgcatcctcgcac-----catcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttctt |
244 |
Q |
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| T |
13883905 |
catcatgttctccatcagtcatcaacagattcgcttccagaaacatcaacattttcagaagcattttaactatcctccgatgacctctgaggactctctt |
13884004 |
T |
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| Q |
245 |
ccacttcctcatcatc |
260 |
Q |
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| T |
13884005 |
ccccttcgtcagcatc |
13884020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 16024464 - 16024562
Alignment:
| Q |
43 |
cgtttagaaaacggcaatgacgttccatctccttcaacttcatgcgcatcatccattttcatcagcttcaccttcactttcagccttattatcatgttct |
142 |
Q |
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| T |
16024464 |
cgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattc-cttcagcttcaccttcactttcagccttatcatcatgttct |
16024562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 16024611 - 16024691
Alignment:
| Q |
178 |
cttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccacttcctcatca |
258 |
Q |
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| T |
16024611 |
cttccagaaacatcaacgtttccagaagcgttttcactgccctctgatgacctctgaggactttcttccccttcatcatca |
16024691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 14397598 - 14397503
Alignment:
| Q |
161 |
caccatcaatagatttgcttccagaaacatcagcattttcagaagtattttcgctgtcctccaatgacctctgaggactttcttccacttcctcat |
256 |
Q |
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| T |
14397598 |
caccattagtagattcacttcctgaaacaacaacattttcagaaccattttcattgtcctccgatgacctatgaggactttcttccccttcatcat |
14397503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 14393168 - 14393132
Alignment:
| Q |
106 |
agcttcaccttcactttcagccttattatcatgttct |
142 |
Q |
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| T |
14393168 |
agcttcaccttcactttcagccttactatcacgttct |
14393132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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