View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_34 (Length: 256)
Name: NF4778_high_34
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 5185930 - 5185774
Alignment:
| Q |
45 |
aggtacaaaattcaaaccacatcatctcttgggttaaaccgccttccggtgtgataaaatgcaacgttgacgcagcaattttccaccataatcaattgtt |
144 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5185930 |
aggttcaaaattcaaaccacatcatctcttgggttaaaccgccttccggtgtgataaaatgcaacgttgacgcagcaattttccaccataatcaattgtt |
5185831 |
T |
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| Q |
145 |
ggatatggaatctgttttcaaaattcggaggggaaactcttaattgcaaaatctgca |
201 |
Q |
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| T |
5185830 |
ggatatgaaatctgttttcaaaattcggaggggaaactcttaattgcaaaatctgca |
5185774 |
T |
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Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 10813596 - 10813439
Alignment:
| Q |
45 |
aggtacaaaattcaaaccacatcatctcttgggttaaaccgccttccggtgtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgt |
143 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10813596 |
aggtacaaaattcgaaccacatcatctcttgggttaaaccgcctcccggtgtgataaaatgcaacgttgacgcagcaattttccaccataatacaattgt |
10813497 |
T |
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| Q |
144 |
tggatatggaatctgttttcaaaattcggaggggaaactcttaattgcaaaatctgca |
201 |
Q |
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| T |
10813496 |
tggatatggaatctgttttcgaaattcggaggggcaactcttaatggcaaaatctgca |
10813439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 52964599 - 52964446
Alignment:
| Q |
45 |
aggtacaaaattcaaaccacatcatctcttgggttaaaccgccttccggtgtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgt |
143 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||| |
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| T |
52964599 |
aggtacaaaattcgaaccacatcatctcttgggtcaaaccgccttccggtgtgataaaatgcaacgttgacacaacaattttccacgataatacaattgt |
52964500 |
T |
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| Q |
144 |
tggatatggaatctgttttcaaaattcggaggggaaactcttaattgcaaaatctg |
199 |
Q |
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| T |
52964499 |
tgg--atggaatctgttttcgaaattatgaggggcaactcttaatggtaaaatctg |
52964446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 16927693 - 16927587
Alignment:
| Q |
95 |
gtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgttggatatggaatctgttttcaaaattcggaggggaaactcttaattgcaa |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||| |
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| T |
16927693 |
gtgataaaatgcaacgttgacgcagcaattttccaccataatacaattgttggatatggaatctgttttcgaaattctgaggggcaactcttaatggcaa |
16927594 |
T |
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| Q |
194 |
aatctgc |
200 |
Q |
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||||||| |
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| T |
16927593 |
aatctgc |
16927587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 51492218 - 51492063
Alignment:
| Q |
45 |
aggtacaaaattcaaaccacatcatctcttgggttaaaccgccttccggtgtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgt |
143 |
Q |
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||||||||||||| |||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
51492218 |
aggtacaaaattcgaaccacataatctcttgggtcaaaccgccttccgatgcgataaaatgcaacgttgacgcatcaattttccacaataatacaattgt |
51492119 |
T |
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| Q |
144 |
tggatatggaatctgttttcaaaattcggaggggaaactcttaattgcaaaatctgc |
200 |
Q |
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|||||||||||||||||||| |||||| | || |||||||||| ||||||||||| |
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| T |
51492118 |
tggatatggaatctgttttcgaaattctta-ggccaactcttaatggcaaaatctgc |
51492063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 34656028 - 34655874
Alignment:
| Q |
47 |
gtacaaaattcaaaccacatcatctcttgggttaaaccgccttccggtgtgataaaatgcaacgttgacgcagcaattttccaccataat-caattgttg |
145 |
Q |
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||||||||||| |||||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
34656028 |
gtacaaaattccaaccacatcatctcttgggtcaaatcgtcttccggtgtgataaaatgcaacattgacgcaacaattttccacaataatataattgttg |
34655929 |
T |
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| Q |
146 |
gatatggaatctgttttcaaaattcggaggggaaactcttaattgcaaaatctgc |
200 |
Q |
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||||| ||||||||||| |||||| |||||| |||||||||| |||||||||| |
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| T |
34655928 |
gatataaaatctgttttcgaaattcagaggggcaactcttaatgacaaaatctgc |
34655874 |
T |
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