View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4778_high_4 (Length: 511)
Name: NF4778_high_4
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 14518551 - 14518068
Alignment:
| Q |
19 |
gttattcacatgataaaaaatacattatattacactaacctaaaccaacatttcataaattgttctgttgaagatctcgaagaggttgcctcttcaaatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14518551 |
gttattcacatgataaaaaatacattatattacactaacctaaaccaacatttcataaattgttctgttgaagatctcgaagaggttgcctcttcaaatt |
14518452 |
T |
|
| Q |
119 |
tactctttgatataattgagtcagaaggtattaaagaacatgattatgaggcaagggaacaaatcgattga-taattaatcaactgtgtacattgaattt |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14518451 |
cactctttgatataattgggtcagaaggtattaaagaacaagattatgaggcaa-ggaacaaatcgattgattaattaatcaactgtgtacattgaattt |
14518353 |
T |
|
| Q |
218 |
ttgctaataaatcatcaccaattaaccatattaagttatgtgcgtggattgat----taatatatcattgattatagacatcgannnnnnnnnaaacaaa |
313 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |
|
|
| T |
14518352 |
ttgctaacaaatcatcacaaattcaccatattaagttatgtgcgtggattgattgagtaatatatcattgattatagacatcgattttttttt-aacaga |
14518254 |
T |
|
| Q |
314 |
tcatcattatagtaggttgtatatgtcattgattaacgaatcgatttacatagatattttattttaacaaagagtctggctagctaacttgataggttta |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14518253 |
tcatcattatagtaggttgtatatgtcattgattaacgaatcgattttcatagatattttattttaacaaagagtctggctagctaacttgataggttta |
14518154 |
T |
|
| Q |
414 |
acttttcctataatgtgtaaacccaccaaatgtgaggataaaaataacaaagagccaacatgataggatatcacgtcttcatctcat |
500 |
Q |
| |
|
||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14518153 |
acttttcctatcatgtgt-aacccaccaaaagtgaggataaaaataacaaagagccaacatgataggatatcacgtcttcatatcat |
14518068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University