View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_49 (Length: 208)
Name: NF4778_high_49
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 42393313 - 42393492
Alignment:
| Q |
10 |
agaagcaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctaacggtttctcccaaatggaa |
109 |
Q |
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| T |
42393313 |
agaaccaaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctagcggtttctcccaaatggaa |
42393412 |
T |
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| Q |
110 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttc |
189 |
Q |
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| T |
42393413 |
gggtctctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttc |
42393492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 42376766 - 42376940
Alignment:
| Q |
15 |
caaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaaccttgtcggatcaaattctaacggtttctcccaaatggaagggtc |
114 |
Q |
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| T |
42376766 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaaccttgtaggatcaaattctagtgggttctcccaaacataagggtc |
42376865 |
T |
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| Q |
115 |
tctatgaatagcccaaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttc |
189 |
Q |
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| T |
42376866 |
tctatgaatagcccaaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttc |
42376940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 42387162 - 42387220
Alignment:
| Q |
15 |
caaaggggaaataattgaagtcattccctttataatcccatttaccatccaagaacctt |
73 |
Q |
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| T |
42387162 |
caaaagggaaatagttgaagtcattcccactataatcccatttaccatccaagaacctt |
42387220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 42387228 - 42387289
Alignment:
| Q |
128 |
caaacgttcacaaacacacaagacccctttggaattgtgtagcctcctacgttggtggtttc |
189 |
Q |
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|||||||| | ||| |||| ||| |||| |||||||||||||||||| | |||||||||||| |
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| T |
42387228 |
caaacgttgataaagacacgagatccctctggaattgtgtagcctccaatgttggtggtttc |
42387289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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