View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_high_5 (Length: 475)
Name: NF4778_high_5
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 22 - 461
Target Start/End: Complemental strand, 9037987 - 9037544
Alignment:
| Q |
22 |
gaaatcaattatatccatattggagcaagttccatgcgctttccattgatcatcccaaaaagcaatgtttattagtcgagacttttcataaactaataaa |
121 |
Q |
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| T |
9037987 |
gaaatcaattatatccatattggagcaacttccatgcgctttccattgctcatcccaaaaagcaatgtttattagtcgagacttttcataaactaataaa |
9037888 |
T |
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| Q |
122 |
tccggccacactttatcaagttcttccttcaagtccaacggaaactgattgaataaaacaaaacaaatagttaattttcaaatcatataaaaataatgat |
221 |
Q |
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| T |
9037887 |
tccggccacactttatcaagttcttccttcaagtccaacggaaactgattgaataaaacaaaacaaaaagttaattttcaaatcatataaaaataatgat |
9037788 |
T |
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| Q |
222 |
aaacagtgaacgaagaaaataaatacacctacattgccaatatctattgtcttttggttggttttatctaaacaatcacgtggatcagatataactctgt |
321 |
Q |
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| T |
9037787 |
aaacaatgaacgaagaaaataaatacacctacattgccaatatctattgtcttttggttggttttatctaaacaaccacgtggatcagatataactctgt |
9037688 |
T |
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| Q |
322 |
tggcaggccacaatccatgcataacgaattctgttggtagaggttgaatgtccttactacatttcttagtttggcaaaatgtcttcggccatctctg--- |
418 |
Q |
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| T |
9037687 |
tagcaggccacaatccatgcataacgaattctgttggtagaggttgaatgtccttactacatttaacagtttggcaaaatgtctttggccatctctggat |
9037588 |
T |
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| Q |
419 |
-gaccatcataaaatgctcgaaatgggtgggagttggtggtggt |
461 |
Q |
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| T |
9037587 |
cgaccatcataaaatgctcaaaatgggtgggaggtggtggtggt |
9037544 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 581076 - 581002
Alignment:
| Q |
176 |
aaaacaaaacaaatagttaa-ttttcaaatcatataaaaataatgataaacagtgaacgaagaaaataaatacac |
249 |
Q |
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||||||||||||| | |||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||| |
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| T |
581076 |
aaaacaaaacaaaaaattaacttttcaaatcatataaaaattatgataaacaactaacgaacaaaataaatacac |
581002 |
T |
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