View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778_low_1 (Length: 658)

Name: NF4778_low_1
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778_low_1
NF4778_low_1
[»] chr3 (16 HSPs)
chr3 (11-642)||(55082478-55083109)
chr3 (232-641)||(38038270-38038677)
chr3 (232-613)||(38041690-38042070)
chr3 (232-632)||(38032016-38032412)
chr3 (232-439)||(50913418-50913626)
chr3 (232-500)||(38027315-38027585)
chr3 (236-555)||(38034863-38035181)
chr3 (232-641)||(50906835-50907233)
chr3 (88-184)||(38035286-38035382)
chr3 (88-238)||(50913649-50913797)
chr3 (95-173)||(38032518-38032596)
chr3 (95-173)||(38038783-38038861)
chr3 (97-173)||(38027691-38027767)
chr3 (331-377)||(55084770-55084816)
chr3 (198-238)||(38035208-38035248)
chr3 (526-582)||(50913274-50913330)
[»] chr8 (2 HSPs)
chr8 (232-641)||(21607979-21608387)
chr8 (95-173)||(21608493-21608571)
[»] chr2 (1 HSPs)
chr2 (366-460)||(3072268-3072362)
[»] chr4 (12 HSPs)
chr4 (259-383)||(27421973-27422097)
chr4 (283-400)||(27424576-27424693)
chr4 (260-383)||(27446125-27446248)
chr4 (314-383)||(27419164-27419233)
chr4 (286-383)||(27556444-27556541)
chr4 (314-383)||(27571601-27571670)
chr4 (307-383)||(27411542-27411618)
chr4 (259-379)||(27559278-27559398)
chr4 (307-383)||(27567233-27567309)
chr4 (307-377)||(27513862-27513932)
chr4 (307-377)||(27526198-27526268)
chr4 (232-400)||(27414314-27414483)


Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 642
Target Start/End: Original strand, 55082478 - 55083109
Alignment:
Q  11 cataggacgtttgattcatcacacggtcatctaagacgacgcaaaaaacaacagatagattcaaaagaatatagttccatt-----------------tc 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||                 ||    
T  55082478 cataggacgtttgattcatcacacggtcatctaagacgacgcaaaaaacaacagataaattcaaaagaatatagtttcattgaagttaggttctcatttc 55082577  T
Q  94 agatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatatgttatcact 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  55082578 agatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcaactagtcaatcctattgtgctatatgttatcact 55082677  T
Q  194 aattaattaattattgaccgttcaagcgagaagttgtatgtaagaccacccatggatgacagtaaccaaactcctcttctgcttggctaagcaattcttg 293  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082678 aattaattaattattggccgttcaagcgagaagttgtatgtaagaccacccatggatgacagtaaccaaactcctcttctgcttggctaagcaattcttg 55082777  T
Q  294 aaataaaggctcattcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttg 393  Q
    |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||  ||| ||                 |||| ||||    
T  55082778 aaataaaggctcattcaaaaatgatactggaatcaggaacctcttcattttctctccaacataaacagcaatat-----------------acttgtttg 55082860  T
Q  394 ctagatgattgacttggactaaatgatgatcttctaataccaggtaagcggaaacccattcttgttttatttcttcacaacagaatgatctcaaagaagt 493  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082861 atagatgattgacttgcactaaatgatgatcttctaataccaggtaagcggaaacccattcttgttttatttcttcacaacagaatgatctcaaagaagt 55082960  T
Q  494 ggtagaaaacagaaatgagcttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaa 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082961 ggtagaaaacagaaatgagcttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaa 55083060  T
Q  594 ccaattgtatggtggatgagttattcaatggggtttagtaggagacatt 642  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55083061 ccaattgtatggtggatgagttattcaatggggtttagtaggagacatt 55083109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 232 - 641
Target Start/End: Complemental strand, 38038677 - 38038270
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||| ||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  38038677 tgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcatg 38038578  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaa 430  Q
    |||||  ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  38038577 aaccttctcattttctctccaacatacactgcaagatggccttttgggacttccacttgtttgctagatgattgacttgcactaaatgatgatcgtctaa 38038478  T
Q  431 taccaggtaagcggaaacccattcttgttttatttcttcacaacagaatgatctcaaagaagtggtagaaaacagaaatgagcttgaattctgatgcttc 530  Q
    ||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||| |||||||| | || ||| |||||||| |||||||||    
T  38038477 taccaggtaagcgaaaacccattctttttttgcttcttcacaacagaatgatctcaaagaagtagtagaaaaaataagtgaacttgaattatgatgcttc 38038378  T
Q  531 aaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatgagttattcaatggggttta 630  Q
      |||| ||||||||| |||||||||||||| | ||| || |  ||||||||||||||| ||||| ||||||||||| | ||| | |||||| |||||||    
T  38038377 ggggtaagaatgatttgtgttgcttctaaacccaatggtggg--tatatatagactttgcaaaccgattgtatggtgaaggagctgttcaat-gggttta 38038281  T
Q  631 gtaggagacat 641  Q
    || ||||||||    
T  38038280 gttggagacat 38038270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 232 - 613
Target Start/End: Complemental strand, 38042070 - 38041690
Alignment:
Q  232 tgtaagaccacccatg-gatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    |||||||||||||||  ||||||||||||| || |||||||| |||||||| | |||||||||||| ||||||||||||||||||| || ||||||||||    
T  38042070 tgtaagaccacccatttgatgacagtaaccgaattcctcttcagcttggctcaacaattcttgaaacaaaggctcattcaagaatgctactggaatcaag 38041971  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaa 430  Q
    ||||||||||||| |||||||||||||||  | | |||||||||||||||||||| || |||||| ||||| |||| || | |||||||||||| |||||    
T  38041970 aacctcttcatttcctctccaacatacaccgctaaatagccttttgggacttccatttgtttgctggatgactgacctgcagtaaatgatgatcgtctaa 38041871  T
Q  431 taccaggtaagcggaaacccattcttgttttatttcttcacaacagaatgatctcaaagaagtggtagaaaacagaaatgagcttgaattctgatgcttc 530  Q
    ||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||| ||||| |||||||| | || | | ||||| || ||||||||     
T  38041870 taccaggtaagcgaaaacccattcttgttttgtttcttcacgactgaatgatctcaacgaagtagtagaaaaaataagttaacttgagttatgatgcttt 38041771  T
Q  531 aaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatgag 613  Q
     ||||| ||||||||| |||||||| ||||| | ||||||||||||  |||||||| || ||||||||||||||||| |||||    
T  38041770 gaggtaagaatgatttgtgttgcttgtaaacccaatgatgagtata--tatagactgtgcaaaccaattgtatggtgaatgag 38041690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 232 - 632
Target Start/End: Complemental strand, 38032412 - 38032016
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||| ||||| |||||||| ||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||      
T  38032412 tgtaagaccgcccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatactggaatcata 38032313  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaa 430  Q
    |||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||| |||||    
T  38032312 aaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgatcgtctaa 38032213  T
Q  431 taccaggtaagcggaaacccattcttg-ttttatttcttcacaacagaatg--atctcaaagaagtggtagaaaacagaaatgagcttgaattctga-tg 526  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||||||  ||||||||||||| ||       | || ||| ||||| |||||| ||    
T  38032212 taccaggtaagcgaaaacccattcttgtttttgtttcttcacaacagaatgaaatctcaaagaagtagt-------ataagtgaacttgagttctgattg 38032120  T
Q  527 cttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatgagttattcaatgggg 626  Q
    |||||||||| |||| |||| |||||||| ||||  | | || | |  |||||||||||||   ||||||||||||||||| ||||||||||||||||||    
T  38032119 cttcaaggtaagaattatttgtgttgcttgtaaatccaaagagggg--tatatatagacttaagaaaccaattgtatggtgaatgagttattcaatgggg 38032022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 232 - 439
Target Start/End: Complemental strand, 50913626 - 50913418
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50913626 tgtaagaccacccattggatgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcaag 50913527  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaa 430  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50913526 aacctcttcattttctctccaacatacactgcaagatagccttttgggacttccacttctttgctagatgattgacttgcactaaatgatgatcttctaa 50913427  T
Q  431 taccaggta 439  Q
    |||||||||    
T  50913426 taccaggta 50913418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 232 - 500
Target Start/End: Complemental strand, 38027585 - 38027315
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||  |||||||      
T  38027585 tgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattcaagaatgatacgggaatcata 38027486  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaa 430  Q
    |||||  ||||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  38027485 aaccttctcattttctctccaacatacactgcaagatggccttttggaacttccacttgtttgctagatgattgacttgcactaagtgatgatcttctaa 38027386  T
Q  431 taccaggtaagcggaaacccattcttg-ttttatttcttcacaacagaatgatctcaaagaagtggtagaa 500  Q
    || |||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||    
T  38027385 taacaggtaagcgaaaacccattcttgtttttgtttcttcacaacagaatgatctcaaagaagtagtagaa 38027315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 236 - 555
Target Start/End: Complemental strand, 38035181 - 38034863
Alignment:
Q  236 agaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaagaacc 334  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  38035181 agaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcatgaacc 38035082  T
Q  335 tcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaatacc 434  Q
    |   |||||||||||||||||||||  |||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||| |    
T  38035081 ttcgcattttctctccaacatacaccgcaagatggccttttgggacttccacttgtttgttagatgattgacttgcactaaatgatgatcgtctaatagc 38034982  T
Q  435 aggtaagcggaaacccattcttgttttatttcttcacaacagaatgatctcaaagaagtggtagaaaacagaaatgagcttgaattctgatgcttcaagg 534  Q
    |||||| || |||||||||||||||||  ||||||| |||||||||||||||||| ||| |   |||| | || ||| |||||||| ||||||||| |||    
T  38034981 aggtaaacgaaaacccattcttgttttgcttcttcagaacagaatgatctcaaagtagtag--aaaaaaataagtgaacttgaattatgatgcttcgagg 38034884  T
Q  535 tatgaatgatttttgttgctt 555  Q
    || ||||||||| ||||||||    
T  38034883 taagaatgatttgtgttgctt 38034863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 232 - 641
Target Start/End: Original strand, 50906835 - 50907233
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||||||||| |||||||||||||  || |||||||| ||||| |  | ||||||||||||| ||||||||||||||||||| | |||||||||     
T  50906835 tgtaagaccacccattggatgacagtaacggaattcctcttcggcttgacgcaacaattcttgaaatgaaggctcattcaagaatgacactggaatcaaa 50906934  T
Q  331 aacctcttcattttc-tctcc-aacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttct 428  Q
    ||||||| ||||||| ||||| |||||||||  ||| ||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||||||   |||    
T  50906935 aacctct-cattttcctctcctaacatacaccgcaaaatagccttttgggacgtccacttgtttgctagacgattgacttgcactaaatgatgactgtct 50907033  T
Q  429 aataccaggtaagcggaaacccattcttgttttatttcttcacaacagaatgatctcaaagaagtggtagaaaacagaaatgagcttgaattctgatgct 528  Q
    ||||||||||||||| ||||||||||||||||| |||||| || || |||||||||||||||||| |||||||  |          | |||| |||||||    
T  50907034 aataccaggtaagcgaaaacccattcttgttttgtttcttgacgactgaatgatctcaaagaagtagtagaaataa----------taaattatgatgct 50907123  T
Q  529 tcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatgagttattcaatggggtt 628  Q
    |  | ||| ||||| | | ||||| |||||||| | |||||  || ||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||    
T  50907124 ttgaagtaggaatggtatgtgttgtttctaaacccaatgat--gtgtatatatagacttcgaaaaccaattgtatggtgaatgagttgttcaat-gggtt 50907220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 38035382 - 38035286
Alignment:
Q  88 catttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatat 184  Q
    ||||| ||||||||||||||||||||| |||||||| |||||| ||||| ||||||||| ||  ||||||||  | |||||||||||||| ||||||    
T  38035382 catttaagatttccacttaagaggaaacatcaaaattgacaaaaaaattgctgatgtacaaaaattgtctcaattggtcaatcctattgtcctatat 38035286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 50913797 - 50913649
Alignment:
Q  88 catttcagatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatcctattgtgctatatgtt 187  Q
    ||||| ||||||||||||||||||||  |||||||| |||||||||||| | ||||||| ||  |||||||| ||||||| ||||| | | |  ||||||    
T  50913797 catttaagatttccacttaagaggaagcatcaaaattgacaaagaaatttccgatgtacaaaacttgtctcaactagtcagtcctactatcc--tatgtt 50913700  T
Q  188 atcactaattaattaattattgaccgttcaagcgagaagttgtatgtaaga 238  Q
    |||||| ||  || |||||| | | ||||||| |||||| |||||||||||    
T  50913699 atcactcatacatgaattatagtctgttcaagtgagaagctgtatgtaaga 50913649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 38032596 - 38032518
Alignment:
Q  95 gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 173  Q
    ||||||||| |||||||||| |||||||| |||||||||||| ||||||||| ||  |||||||| || ||||||||||    
T  38032596 gatttccacctaagaggaaacatcaaaattgacaaagaaatttctgatgtacaaaaattgtctcaactggtcaatccta 38032518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 38038861 - 38038783
Alignment:
Q  95 gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 173  Q
    |||||| ||||||||||||| |||||||| ||||||||| || ||||||||| ||  |||||||| || ||||||||||    
T  38038861 gatttcaacttaagaggaaacatcaaaattgacaaagaagttgctgatgtacaaaaattgtctcaactggtcaatccta 38038783  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 38027767 - 38027691
Alignment:
Q  97 tttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 173  Q
    ||||||| |||||||||| |||||||| || ||||||||| ||||||||||||  || ||||| || ||||||||||    
T  38027767 tttccacataagaggaaacatcaaaattgataaagaaattgctgatgtacgaaaattatctcaactggtcaatccta 38027691  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 55084816 - 55084770
Alignment:
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgg 377  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||||    
T  55084816 aaccgcttcattttctctccaacatacactgcaagacacccttttgg 55084770  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 38035248 - 38035208
Alignment:
Q  198 aattaattattgaccgttcaagcgagaagttgtatgtaaga 238  Q
    |||||||||| ||||||||||| |||||| |||||||||||    
T  38035248 aattaattatagaccgttcaagagagaagctgtatgtaaga 38035208  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 582
Target Start/End: Complemental strand, 50913330 - 50913274
Alignment:
Q  526 gcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatata 582  Q
    ||||||||||| ||||||||| |||||||| ||||||| | ||||  ||||||||||    
T  50913330 gcttcaaggtaagaatgatttgtgttgcttgtaaactcaaggatggttatatatata 50913274  T

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Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 232 - 641
Target Start/End: Complemental strand, 21608387 - 21607979
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||| ||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  21608387 tgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcatg 21608288  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaa 430  Q
    |||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||| |||||    
T  21608287 aaccttctcattttctctccaacatacactgcaagatagccttttggaacttccacttgtttgatagatgattgacttgcactaaatgatgatcgtctaa 21608188  T
Q  431 taccaggtaagcggaaacccattcttg-ttttatttcttcacaacagaatgatctcaaagaagtggtagaaaacagaaatgagcttgaattctgatgctt 529  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| | || ||| |||||||| ||||||||    
T  21608187 taccaggtaagcgaaaacccattcttgtttttgtttcttcacaacagaatgatctcaaagaagtagtagaaaaaataagtgaacttgaattatgatgctt 21608088  T
Q  530 caaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatgagttattcaatggggttt 629  Q
    | ||||| ||||||||| | |||||||||||| | ||| || |  ||||||||||||||  ||||| ||||||||||| | ||| | |||||| ||||||    
T  21608087 cgaggtaagaatgatttgttttgcttctaaacccaatggtggg--tatatatagactttacaaaccgattgtatggtgaaggagctgttcaat-gggttt 21607991  T
Q  630 agtaggagacat 641  Q
    ||| ||||||||    
T  21607990 agttggagacat 21607979  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 21608571 - 21608493
Alignment:
Q  95 gatttccacttaagaggaaagatcaaaatggacaaagaaattcctgatgtacgaatgttgtctcagctagtcaatccta 173  Q
    |||||| || |||||||||| |||||||| |||||||||||| ||||||||| ||   ||||||| || ||||||||||    
T  21608571 gatttcaacataagaggaaacatcaaaattgacaaagaaattactgatgtacaaaaaatgtctcaactggtcaatccta 21608493  T

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Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 366 - 460
Target Start/End: Complemental strand, 3072362 - 3072268
Alignment:
Q  366 atagccttttgggacttccacttctttgctagatgattgacttggactaaatgatgatcttctaataccaggtaagcggaaacccattcttgttt 460  Q
    |||||| |||||| ||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  3072362 atagccatttggggcttcctcttgtttgctagatgattgacttgcactaaatgatgatcgtctaataccaggtaagcgaaaacccattcttgttt 3072268  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 27421973 - 27422097
Alignment:
Q  259 ccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaagaacctcttcattttctctccaacataca 358  Q
    ||||| || |||||||||||  | || |||||||||||||| || |  |||||| |||||| |||||||| |||||  |||||| | ||||||||||| |    
T  27421973 ccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttcaagtatgatactggaatcacgaaccgtttcattctatctccaacataga 27422072  T
Q  359 ctacaagatagccttttgggacttc 383  Q
    || | ||||||||||||||||||||    
T  27422073 ctgcgagatagccttttgggacttc 27422097  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 27424576 - 27424693
Alignment:
Q  283 agcaattcttgaaataaaggctcattcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggactt 382  Q
    ||||||||||||||| |||| |  |||||| |||||| ||||||||  |||| | ||||||  ||||||||||| ||| | |||||||||||||||||||    
T  27424576 agcaattcttgaaatgaaggttggttcaagtatgatactggaatcacaaaccgcctcatttgatctccaacatagactgcgagatagccttttgggactt 27424675  T
Q  383 ccacttctttgctagatg 400  Q
    | | | |||| |||||||    
T  27424676 cgaatcctttactagatg 27424693  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 383
Target Start/End: Complemental strand, 27446248 - 27446125
Alignment:
Q  260 caaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaagaacctcttcattttctctccaacatacac 359  Q
    ||||||| ||||||| |||||| | | | ||||||||| |||| | |||||| |||||   ||||||||  || | ||||||||| ||||||||||| ||    
T  27446248 caaactcttcttctgattggcttaacgactcttgaaatgaaggttgattcaataatgaagttggaatcacaaatcgcttcattttttctccaacataaac 27446149  T
Q  360 tacaagatagccttttgggacttc 383  Q
      ||||||||||||||||||||||    
T  27446148 cgcaagatagccttttgggacttc 27446125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 27419164 - 27419233
Alignment:
Q  314 atgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggacttc 383  Q
    |||||| |||||||| ||||| | ||||| | ||||||||||| ||| | ||||||||||||||||||||    
T  27419164 atgatactggaatcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttc 27419233  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 27556444 - 27556541
Alignment:
Q  286 aattcttgaaataaaggctcattcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggacttc 383  Q
    |||||||||||| |||| |  ||||| ||||| |  |||||||  || | ||||||||| ||||||||||| ||| | ||||||||||||||||||||    
T  27556444 aattcttgaaatgaaggttggttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagatagccttttgggacttc 27556541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 27571670 - 27571601
Alignment:
Q  314 atgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggacttc 383  Q
    |||||| |||||||| ||||| | ||||| | ||||||||||| ||| | ||||||||||||||||||||    
T  27571670 atgatactggaatcacgaaccgcctcattctatctccaacatagactgcgagatagccttttgggacttc 27571601  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 27411542 - 27411618
Alignment:
Q  307 ttcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggacttc 383  Q
    |||||| |||||| |||||||| |||||   ||||| | ||||||||||| ||| | ||||||||||||||||||||    
T  27411542 ttcaagtatgatactggaatcacgaaccgtctcattctatctccaacatagactgcgagatagccttttgggacttc 27411618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 379
Target Start/End: Original strand, 27559278 - 27559398
Alignment:
Q  259 ccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaagaacctcttcattttctctccaacataca 358  Q
    |||||||| ||||||| |||||| |  || | ||||||| |||  | |||||| ||||| |  |||||||  || ||||||||||| ||||||||||| |    
T  27559278 ccaaactcttcttctgattggcttaataactattgaaatgaagattgattcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaa 27559377  T
Q  359 ctacaagatagccttttggga 379  Q
    || | ||||||||||||||||    
T  27559378 ctgcgagatagccttttggga 27559398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 383
Target Start/End: Complemental strand, 27567309 - 27567233
Alignment:
Q  307 ttcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgggacttc 383  Q
    |||||| |||||| |||||||| |||||   ||||| | ||||||||||| ||| | ||||||||||||||||||||    
T  27567309 ttcaagtatgatactggaatcacgaaccgtctcattctatctccaacatagactgcgagatagccttttgggacttc 27567233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 27513862 - 27513932
Alignment:
Q  307 ttcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgg 377  Q
    |||||| |||||| ||| ||||  |||| ||||||||||||||| ||||||||| | ||||| ||||||||    
T  27513862 ttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttgg 27513932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 27526198 - 27526268
Alignment:
Q  307 ttcaagaatgataatggaatcaagaacctcttcattttctctccaacatacactacaagatagccttttgg 377  Q
    |||||| ||||||  |||||||  |||| ||||||||||||||||||||||||| | ||||| || |||||    
T  27526198 ttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttgg 27526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 400
Target Start/End: Original strand, 27414314 - 27414483
Alignment:
Q  232 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaagaatgataatggaatcaag 330  Q
    ||||||||||||||| ||||||   || ||||| || ||||||| |||  | || |||||||||||| | || |  |||||| ||||||  |||||||      
T  27414314 tgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatacaggaatcaca 27414413  T
Q  331 aacctcttcattttctctccaacatacactacaagatagccttttgggacttccacttctttgctagatg 400  Q
    ||||   ||||||| |||||||| || ||| |||||||||||||||| ||||| | | | ||||||||||    
T  27414414 aaccgtctcattttatctccaacgtagactgcaagatagccttttggcacttcaaatcccttgctagatg 27414483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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