View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4778_low_10 (Length: 428)
Name: NF4778_low_10
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 9866371 - 9865988
Alignment:
| Q |
19 |
taaccactgcacttcaacaacataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaagaacatatacatttatagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9866371 |
taaccactgcacttcaacaacataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaagaacatatacatttatagc |
9866272 |
T |
|
| Q |
119 |
aaaataataatgataattatgtgaaaaatattgtaggtttaatataatttttataaccaaccgacatcagtcttaacaagcatgagtaataataatgtac |
218 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9866271 |
aaaatgataatgatatttatgtgaaaaatattgtaggtttaatataattttt-taaccaaccgacatcagtcttaacaagcatgag---taataatgtac |
9866176 |
T |
|
| Q |
219 |
caaaaaagcatgagtaatacttggcttnnnnnnnnnnnnnnnnnnntcatggtatggcatcacctcgtgaaattgttcaaataggtaggaagcctccttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9866175 |
caaaaaagcatgagtaatacttggcttaaaaaaaaaaggc-------catggtatggcgtcacctcgtgaaattgttcaaataggtaggaagcctccttt |
9866083 |
T |
|
| Q |
319 |
accgggatgggttaagttgaatacggataattcttatagaggtaatgggttacccgattgtggtggtgttaaccgtggaagtgatggtgaatggt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9866082 |
accgggatgggttaagttgaatacggataattcttatagaggtaatgggttacccggttgtggtggtgttaaccgtggaagtgatggtgaatggt |
9865988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 271 - 413
Target Start/End: Complemental strand, 4065163 - 4065021
Alignment:
| Q |
271 |
tatggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaatacggataattcttatagaggtaatgggtta |
370 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||| |||| |||| | |||||||||||||||||| | | || ||||| |||||||||| |
|
|
| T |
4065163 |
tatggcgtcacctcgtgaaattgttcaaagtggttggaagcctcttttagagggacgagttaagttgaatacggatgactgttgtagagataatgggtta |
4065064 |
T |
|
| Q |
371 |
cccgattgtggtggtgttaaccgtggaagtgatggtgaatggt |
413 |
Q |
| |
|
| | |||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
4065063 |
gctggttgtggtggttttatccgtagaagtgatggggaatggt |
4065021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 412
Target Start/End: Complemental strand, 24184874 - 24184734
Alignment:
| Q |
274 |
ggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccggg--atgggttaagttgaatacggataattcttatagaggtaatgggttac |
371 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||| ||| || ||||||||||||||| || ||| ||||| ||||| |||| |
|
|
| T |
24184874 |
ggcatcaccttgtgaaattgttcaaattggttggaagcctcctttagagggatataggttaagttgaatacaaatggctctcgtagagataatgagttag |
24184775 |
T |
|
| Q |
372 |
ccgattgtggtggtgttaaccgtggaagtgatggtgaatgg |
412 |
Q |
| |
|
| | ||||||||||| || |||||||||||||||||||| |
|
|
| T |
24184774 |
ctggttgtggtggtgatattggtggaagtgatggtgaatgg |
24184734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University