View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_12 (Length: 408)
Name: NF4778_low_12
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 8233089 - 8233473
Alignment:
| Q |
14 |
tactaactgcttgttggaaattgtcaaattcctcataacnnnnnnnnngacaatgtacatttggaatccataacaaagatgtaaaagctcagattattat |
113 |
Q |
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| T |
8233089 |
tacttactgcttgatggaaattgtcaaattcttcataactttttttt-gacaatgcacatttggaatccataccaaagatgtaaaagctcagattatgat |
8233187 |
T |
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| Q |
114 |
a----agtttatttcatgaatacattcggaatccataataaaacagttttaaggagtttcaaacttcaaaggtatcaatataacaatacaaacaaaattg |
209 |
Q |
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| T |
8233188 |
attttagtttatttcatgaatacattcggaatccataataaaacagttttaaggagtttcaaacttcaaaggtatcaatataacaatacaaacaaaattg |
8233287 |
T |
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| Q |
210 |
gaatagcacttaagctgccacgttattgtactctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccatt |
309 |
Q |
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| T |
8233288 |
gaatagcacttaagctgccacgttattgtactctctttcaacagcttttttgaggatgctgtctttttccaagaccatttgaattggcatgaaacccatc |
8233387 |
T |
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| Q |
310 |
ccatctgccattgcaagcataatttgcttagtttctttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactg |
395 |
Q |
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| T |
8233388 |
ccatctgccattgcaagcatcatctgcttagtttctttcttgaattcttccaaatcaattgtgccattcaagttgtgatcgaactg |
8233473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 239 - 395
Target Start/End: Original strand, 8223556 - 8223712
Alignment:
| Q |
239 |
actctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgctt |
338 |
Q |
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| T |
8223556 |
actctctttcaacagctatttttaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgctt |
8223655 |
T |
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| Q |
339 |
agtttctttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactg |
395 |
Q |
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| T |
8223656 |
agtttctttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaactg |
8223712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 8236670 - 8236817
Alignment:
| Q |
245 |
tttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgcttagtttc |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
8236670 |
tttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccatcccatctgccattgcaagcatcatctgcttagtttc |
8236769 |
T |
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| Q |
345 |
tttcttgaattcttccagatcaaccgtgccattcaagttgtgatcgaa |
392 |
Q |
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| T |
8236770 |
cttcttgaattcttccaaatcaattgtgccattcaagttgtgatcgaa |
8236817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 8211079 - 8211191
Alignment:
| Q |
239 |
actctctttcaacagcttttttgaggatgctgtcttcttccaagaccatttgaattggcatgaaacccattccatctgccattgcaagcataatttgctt |
338 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
8211079 |
actctctttcaacagctatttttaggatgctgtcttcttccaagaccatttgaattggcatgaaacccaatccatctgccattgcgagcataatttgctt |
8211178 |
T |
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| Q |
339 |
agtttctttcttg |
351 |
Q |
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||||||||||||| |
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| T |
8211179 |
agtttctttcttg |
8211191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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