View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778_low_13 (Length: 404)

Name: NF4778_low_13
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778_low_13
NF4778_low_13
[»] chr6 (5 HSPs)
chr6 (13-253)||(7978394-7978634)
chr6 (283-347)||(9402514-9402578)
chr6 (223-262)||(29199903-29199942)
chr6 (220-277)||(34178344-34178401)
chr6 (291-343)||(10925550-10925602)
[»] chr8 (13 HSPs)
chr8 (285-347)||(17108301-17108363)
chr8 (266-347)||(29918532-29918611)
chr8 (285-347)||(5793510-5793572)
chr8 (118-195)||(33631821-33631899)
chr8 (266-347)||(17084191-17084272)
chr8 (283-347)||(6388604-6388668)
chr8 (214-252)||(15173889-15173927)
chr8 (215-277)||(33631909-33631971)
chr8 (285-347)||(36274968-36275029)
chr8 (214-270)||(30481430-30481486)
chr8 (283-347)||(30903971-30904035)
chr8 (223-275)||(30904064-30904116)
chr8 (214-270)||(45236088-45236144)
[»] chr2 (12 HSPs)
chr2 (283-347)||(13531875-13531939)
chr2 (283-347)||(25210303-25210367)
chr2 (283-347)||(34544410-34544474)
chr2 (276-347)||(17845485-17845555)
chr2 (215-270)||(44057907-44057962)
chr2 (285-347)||(29656836-29656898)
chr2 (270-347)||(30696850-30696925)
chr2 (283-346)||(13954672-13954735)
chr2 (283-346)||(14095879-14095942)
chr2 (214-277)||(43371570-43371633)
chr2 (214-270)||(3547190-3547246)
chr2 (285-333)||(42995773-42995821)
[»] chr5 (9 HSPs)
chr5 (118-178)||(39422463-39422524)
chr5 (283-347)||(24207612-24207676)
chr5 (283-347)||(12457442-12457506)
chr5 (284-344)||(16311394-16311453)
chr5 (285-347)||(27900503-27900565)
chr5 (285-339)||(35584050-35584103)
chr5 (285-339)||(38972855-38972909)
chr5 (283-347)||(17153094-17153158)
chr5 (283-311)||(18451985-18452013)
[»] chr7 (12 HSPs)
chr7 (283-346)||(11472811-11472874)
chr7 (214-271)||(42908050-42908107)
chr7 (223-262)||(10990879-10990918)
chr7 (214-262)||(18684010-18684058)
chr7 (214-274)||(37103136-37103196)
chr7 (223-270)||(22973416-22973463)
chr7 (215-270)||(32546220-32546275)
chr7 (214-247)||(29014961-29014994)
chr7 (214-270)||(12980405-12980461)
chr7 (214-270)||(26622979-26623035)
chr7 (220-252)||(28309538-28309570)
chr7 (214-270)||(45380135-45380191)
[»] chr4 (23 HSPs)
chr4 (223-274)||(45065274-45065325)
chr4 (285-347)||(33516174-33516236)
chr4 (286-347)||(37384204-37384265)
chr4 (283-347)||(8843904-8843968)
chr4 (283-347)||(8856868-8856932)
chr4 (283-347)||(9929267-9929331)
chr4 (283-347)||(33616215-33616279)
chr4 (283-347)||(39086087-39086150)
chr4 (283-334)||(9280989-9281040)
chr4 (215-270)||(21544608-21544663)
chr4 (286-334)||(4741318-4741366)
chr4 (283-343)||(21714075-21714135)
chr4 (283-347)||(36919054-36919118)
chr4 (223-270)||(14605944-14605991)
chr4 (283-341)||(21956914-21956971)
chr4 (283-345)||(42907820-42907881)
chr4 (214-262)||(1866559-1866607)
chr4 (214-270)||(9929177-9929233)
chr4 (283-347)||(12075731-12075795)
chr4 (214-262)||(25298843-25298891)
chr4 (214-270)||(29527841-29527897)
chr4 (284-316)||(43553408-43553440)
chr4 (283-339)||(50376451-50376507)
[»] chr1 (10 HSPs)
chr1 (285-347)||(16903441-16903503)
chr1 (283-347)||(42729043-42729107)
chr1 (215-270)||(25154837-25154892)
chr1 (283-347)||(13692570-13692635)
chr1 (283-347)||(36421692-36421756)
chr1 (283-347)||(39219184-39219248)
chr1 (285-344)||(43513130-43513189)
chr1 (285-343)||(5703275-5703332)
chr1 (291-344)||(47644966-47645019)
chr1 (282-343)||(48576216-48576277)
[»] scaffold0059 (1 HSPs)
scaffold0059 (215-277)||(70111-70173)
[»] chr3 (4 HSPs)
chr3 (283-345)||(37032197-37032259)
chr3 (214-277)||(40796147-40796209)
chr3 (286-347)||(27937664-27937725)
chr3 (283-347)||(772893-772956)
[»] scaffold0005 (1 HSPs)
scaffold0005 (223-270)||(211387-211434)
[»] scaffold0013 (1 HSPs)
scaffold0013 (224-270)||(128140-128186)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 7978394 - 7978634
Alignment:
Q  13 taccaaagtttcaattaacatgttgtctagtactatatgaagatcaaaatgctcatatttcaagtagtatttcaaacttgatttctaaatatagtataca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7978394 taccaaagtttcaattaacatgttgtctagtactatatgaagatcaaaatgctcatatttcaagtagtatttcaaacttgatttctaaatatggtataca 7978493  T
Q  113 tctcttagacatggcaacaaagctcatacctgtgggtaccgcccgaatcaaacctaaattgacaggctttttcggctttgactcaccaaatgtcatgact 212  Q
     ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7978494 gctcttagacatggcaacaaagttcatacccgtggataccgcccgaatcaaacctaaattgacaggttttttcggctttgactcaccaaatgtcatgact 7978593  T
Q  213 cgtttttcctgatttcaaaatacgggtacgggacgtgtaat 253  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  7978594 cgtttttcccgatttcaaaatacgggtacgggacgtgtaat 7978634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 9402578 - 9402514
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||| || ||| |||||||| ||| ||||  ||||||||||| ||||||||||||    
T  9402578 agaaaatcaatttagtaccccatttatataaatagaaacccaaaccctaaatcatttcactcaca 9402514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 29199903 - 29199942
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatata 262  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  29199903 gatttcaaaatacgggtacgggacgggtaacagggatata 29199942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 34178344 - 34178401
Alignment:
Q  220 cctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 277  Q
    ||||||||||||| ||||||||| |||| |||| | ||||||| ||||||| ||||||    
T  34178344 cctgatttcaaaacacgggtacgagacgggtaacaaggatataggtacccaccccaaa 34178401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 10925550 - 10925602
Alignment:
Q  291 aatttattatcccttttatatagatataaacttaaaccctaaataatttcact 343  Q
    |||||||||| ||||||||||| ||| || || ||||||||||| ||||||||    
T  10925550 aatttattattccttttatataaatagaatctgaaaccctaaatcatttcact 10925602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 17108363 - 17108301
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  17108363 aaaatcaatttattatccattttatataaatagaaacttaaaccctaaataatttcactcaca 17108301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 29918611 - 29918532
Alignment:
Q  266 acccatcccaaatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||| |||||||||||||  |||||||||||||| | |||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  29918611 acccgtcccaaatgtaaa--aaatcaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcactcaca 29918532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 5793572 - 5793510
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||| ||||||  ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  5793572 aaaatcaattaattatcatttttatataaatagaaactcaaaccctaaatcatttcactcaca 5793510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 33631821 - 33631899
Alignment:
Q  118 tagacatggcaacaaagctcatacctgtgggtac-cgcccgaatcaaacctaaattgacaggctttttcggctttgact 195  Q
    |||||||||||||||||| |||||| |||||||| | |||||| |||| |||||||||| || |||| | |||||||||    
T  33631821 tagacatggcaacaaagcccatacccgtgggtacgcacccgaaccaaatctaaattgacgggtttttcccgctttgact 33631899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 17084191 - 17084272
Alignment:
Q  266 acccatcccaaatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||| | |||||||| |||||||||||||| ||| ||||||||| ||||||||  || |||||||| ||| | ||||||    
T  17084191 acccatcacgaatgtaaaaaaaatcaatttattgtcctttttatataaatataaacccaagccctaaattattcccctcaca 17084272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 6388604 - 6388668
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| || ||||||||| | | ||||  ||||||||||| ||||||||||||    
T  6388604 agaaaatcaatttattacccattttatataaacagaaacccaaaccctaaatcatttcactcaca 6388668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 15173889 - 15173927
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaa 252  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  15173889 gtttttcccgatttcaaaatacgggtacgggacgggtaa 15173927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 33631909 - 33631971
Alignment:
Q  215 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 277  Q
    |||| |||||| |||||| | ||||| |||||| ||||| |||||||||||||||| ||||||    
T  33631909 ttttacctgatctcaaaacatgggtatgggacgagtaatggggatataagtacccaccccaaa 33631971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 36275029 - 36274968
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||| ||||||||||||||| ||| ||||   |||||||||| ||||||||||||    
T  36275029 aaaatcaatttactatcccttttatataaatagaaac-ccaaccctaaatcatttcactcaca 36274968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 30481430 - 30481486
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||||||||||||||||||||| ||| | |||| |||||  ||||||| |||||||    
T  30481430 gtttttcctgatttcaaaatacgagtatgagacgagtaatgaggatataggtaccca 30481486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 30904035 - 30903971
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||||||  | ||||||||| ||| ||||  ||||| ||||| ||||||||||||    
T  30904035 agaaaatcaatttattacacattttatataaatagaaaccaaaaccttaaatcatttcactcaca 30903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 30904116 - 30904064
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatccca 275  Q
    |||||||||| ||||||||| |||| ||||| | |||||||||||||| ||||    
T  30904116 gatttcaaaacacgggtacgagacgggtaatggagatataagtacccacccca 30904064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 45236144 - 45236088
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||| ||||||||||||| ||||||| |||||| ||||| || ||||| |||||||    
T  45236144 gttttccctgatttcaaaacacgggtatgggacgggtaatgggtatataggtaccca 45236088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 13531939 - 13531875
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  13531939 agaaaatcaatttattatccattttatataaatagaaactcaaaccctaaatcatttcactcaca 13531875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 25210367 - 25210303
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||| ||| || ||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  25210367 agaaaatcaatttgttacccattttatataaatagaaactcaaaccctaaatcatttcactcaca 25210303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 34544410 - 34544474
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||| |||||||| || ||||||||| ||| ||||| |||||||||||||||||| |||||    
T  34544410 agaaaatctatttattacccattttatataaataaaaactcaaaccctaaataatttcattcaca 34544474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 17845485 - 17845555
Alignment:
Q  276 aatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||| |||||||||||||||||| ||||||||| ||| |||||  || ||||||| ||||||||||||    
T  17845485 aatgtaaa-aaaatcaatttattatcctttttatataaatagaaactccaaacctaaatcatttcactcaca 17845555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 44057962 - 44057907
Alignment:
Q  215 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||| |||||||||||||||| ||||||||||| ||||| |||||||| |||||||    
T  44057962 ttttccctgatttcaaaataccggtacgggacgggtaatggggatatatgtaccca 44057907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 29656836 - 29656898
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||||||||||||||||| ||| ||||   |||||||||| |||| |||||||    
T  29656836 aaaatcaatttattatcccttttatataaataaaaaccataaccctaaatcatttgactcaca 29656898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 30696925 - 30696850
Alignment:
Q  270 atcccaaatgtaaagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||  |||||||||||||| || ||||||||| ||| ||| | ||||||||||| || |||||||||    
T  30696925 atcccaaatgtaaa--aaatcaatttattacccattttatataaatagaaattcaaaccctaaatcatgtcactcaca 30696850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 13954735 - 13954672
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcac 346  Q
    |||||||||| |||||| | |||||||||| ||| |||||  |||||||||| |||||||||||    
T  13954735 agaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcac 13954672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 14095942 - 14095879
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcac 346  Q
    |||||||||| |||||| | |||||||||| ||| |||||  |||||||||| |||||||||||    
T  14095942 agaaaatcaacttattaccacttttatataaatagaaactcgaaccctaaatcatttcactcac 14095879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 43371633 - 43371570
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 277  Q
    ||||| || ||||| ||||||||||||||||||| ||||  |||||||| ||||||| ||||||    
T  43371633 gttttccccgattttaaaatacgggtacgggacgggtaacggggatatatgtacccaccccaaa 43371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 3547246 - 3547190
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||||| | ||||||||||||||||||||||||| ||||  | |||||| |||||||    
T  3547246 gtttttaccgatttcaaaatacgggtacgggacgggtaacggagatatatgtaccca 3547190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 42995821 - 42995773
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaa 333  Q
    ||||| ||||||||||| |||||||||| ||| ||||||||||| ||||    
T  42995821 aaaattaatttattatctcttttatataaataaaaacttaaaccgtaaa 42995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 39422524 - 39422463
Alignment:
Q  118 tagacatggcaacaaagctcatacctgtgggt-accgcccgaatcaaacctaaattgacagg 178  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||    
T  39422524 tagacatggcaacaaagctcatacctgtgggtaaccgcccgaaccacacccaaattgacagg 39422463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 24207676 - 24207612
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||| |||||||||  ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  24207676 agaaaattaatttattaatccttttatataaataaaaactaaaaccctaaataacttcactcaca 24207612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 12457506 - 12457442
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| |||||| ||||| ||| |||| ||||  |||||| ||||||||||||    
T  12457506 agaaaatcaatttattacccctttaatataaatagaaacctaaagtctaaatcatttcactcaca 12457442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 16311394 - 16311453
Alignment:
Q  284 gaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactc 344  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||||||||| |||| ||||    
T  16311394 gaaaatcaatttattatcccttttatataaatagaaac-caaaccctaaatcattttactc 16311453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 27900503 - 27900565
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||  | |||||||||| ||| ||||| ||||||||||| |||||| |||||    
T  27900503 aaaatcaatttatttcctcttttatataaatagaaactgaaaccctaaatcatttcagtcaca 27900565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 35584103 - 35584050
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataattt 339  Q
    ||||||||||||||| |||||||||||| ||| ||||| ||||||||||| ||||    
T  35584103 aaaatcaatttatta-cccttttatataaatagaaactcaaaccctaaatcattt 35584050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 38972909 - 38972855
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataattt 339  Q
    ||||||||||||||| |||||||||||| ||  ||||| ||||||||||| ||||    
T  38972909 aaaatcaatttattaacccttttatataaatcgaaactgaaaccctaaatcattt 38972855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 17153158 - 17153094
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| ||||| || ||| ||| |||   ||| ||||||||||||||||||||    
T  17153158 agaaaatcaatttattaccccttctagataaatagaaatccaaaacctaaataatttcactcaca 17153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 18451985 - 18452013
Alignment:
Q  283 agaaaatcaatttattatcccttttatat 311  Q
    |||||||||||||||||||||||||||||    
T  18451985 agaaaatcaatttattatcccttttatat 18452013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 11472811 - 11472874
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcac 346  Q
    |||||||||||||||||| ||||||||||| ||| ||||  ||||||||||| |||||||||||    
T  11472811 agaaaatcaatttattataccttttatataaatagaaaccaaaaccctaaatcatttcactcac 11472874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 42908050 - 42908107
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccat 271  Q
    ||||| || ||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  42908050 gttttccccgatttcaaaatacgggtacgggacgggtaatggggatatatgtacccat 42908107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 10990879 - 10990918
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatata 262  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10990879 gatttcaaaatacgggtacgggacgggtaatagggatata 10990918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 18684058 - 18684010
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatata 262  Q
    ||||| || ||||||||||||||||||||||||| |||| |||||||||    
T  18684058 gttttccccgatttcaaaatacgggtacgggacgggtaacagggatata 18684010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 37103136 - 37103196
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatccc 274  Q
    |||||||||||||||||||||||||||||||| | ||||   ||||||| | |||||||||    
T  37103136 gtttttcctgatttcaaaatacgggtacgggaagggtaacgaggatatatgcacccatccc 37103196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 22973463 - 22973416
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||||||||||||||||||||||| ||||| |||||||  |||||||    
T  22973463 gatttcaaaatacgggtacgggacgggtaatggggatatctgtaccca 22973416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 32546275 - 32546220
Alignment:
Q  215 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||||| ||||||||||||||||||||| ||| ||||  |||||||| |||||||    
T  32546275 tttttcccgatttcaaaatacgggtacggaacgggtaacggggatatatgtaccca 32546220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 29014961 - 29014994
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacg 247  Q
    |||||||| |||||||||||||||||||||||||    
T  29014961 gtttttcccgatttcaaaatacgggtacgggacg 29014994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 12980461 - 12980405
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||| || |||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  12980461 gttttccccgatttcaaaacacgggtatgggacgggtaatgggtatataagtaccca 12980405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 26623035 - 26622979
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||| ||||||||||||| ||||||| |||| | ||||| || |||||||||||||    
T  26623035 gttttccctgatttcaaaacacgggtatgggatgggtaatgggtatataagtaccca 26622979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 28309570 - 28309538
Alignment:
Q  220 cctgatttcaaaatacgggtacgggacgtgtaa 252  Q
    |||||||||||||||||||||||||||| ||||    
T  28309570 cctgatttcaaaatacgggtacgggacgggtaa 28309538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 45380191 - 45380135
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||||||| |||||||||||||||||| |||||| ||||  || ||||| |||||||    
T  45380191 gtttttcccgatttcaaaatacgggtatgggacgggtaacgggtatataggtaccca 45380135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 45065325 - 45065274
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatccc 274  Q
    ||||||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  45065325 gatttcaaaatacgggtacgggacgagtaacagggatatatgtacccatccc 45065274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 33516174 - 33516236
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||| ||||| |||||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  33516174 aaaatcaatgtattaccccttttatataaataaaaactcaaaccctaaatcatttcactcaca 33516236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 37384265 - 37384204
Alignment:
Q  286 aaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||||||||||||| ||| ||  | ||||||||||| ||||||||||||    
T  37384265 aaatcaatttattatcccttttatataaatagaagttcaaaccctaaatcatttcactcaca 37384204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 8843904 - 8843968
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||| ||||||||| |||||| ||||| ||| ||||||||| ||||||| ||||||||||||    
T  8843904 agaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcaca 8843968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 8856868 - 8856932
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||| ||||||||| |||||| ||||| ||| ||||||||| ||||||| ||||||||||||    
T  8856868 agaaaattaatttattacccctttcatataaatagaaacttaaatcctaaatcatttcactcaca 8856932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 9929267 - 9929331
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| | |||  ||||| ||||||||| |||| |||||||||||||||||||    
T  9929267 agaaaatcaatttattacctcttccatataaatataaactgaaactctaaataatttcactcaca 9929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 33616215 - 33616279
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| |||||||||||| ||| |||   ||||||||||| ||||||||||||    
T  33616215 agaaaatcaatttattaccccttttatataaataaaaatcaaaaccctaaatcatttcactcaca 33616279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 39086150 - 39086087
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||| || || ||||||||| ||| ||||||||||||||||| ||||||||||||    
T  39086150 agaaaatcaatttacta-cctttttatataaatagaaacttaaaccctaaatcatttcactcaca 39086087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 9280989 - 9281040
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaat 334  Q
    ||||||| |||||||||||||||||||||||||| ||| | |||||||||||    
T  9280989 agaaaataaatttattatcccttttatatagatagaaattcaaaccctaaat 9281040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 21544663 - 21544608
Alignment:
Q  215 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||||| ||||||||||||||||||||||||  ||||| |||||||| |||||||    
T  21544663 tttttcccgatttcaaaatacgggtacgggacaggtaatggggatatatgtaccca 21544608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 4741318 - 4741366
Alignment:
Q  286 aaatcaatttattatcccttttatatagatataaacttaaaccctaaat 334  Q
    ||||||||||||||||| ||||||||| ||| ||||| |||||||||||    
T  4741318 aaatcaatttattatccattttatataaatagaaactcaaaccctaaat 4741366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 21714075 - 21714135
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcact 343  Q
    ||||||| ||||||||| | |||||||||| ||| ||||| ||||||||||| ||||||||    
T  21714075 agaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcact 21714135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 36919118 - 36919054
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||| ||||||| | |||||||||| ||| ||||| |||| |||||| ||||||||||||    
T  36919118 agaaaatcagtttattaccacttttatataaatagaaactcaaactctaaatcatttcactcaca 36919054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 14605944 - 14605991
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  14605944 gatttcaaaatacgggtacgagacgggtaacagggatatatgtaccca 14605991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 21956914 - 21956971
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttca 341  Q
    ||||||||||||||||| |||||||||||| ||| ||||  ||||||||||| ||||||    
T  21956914 agaaaatcaatttatta-cccttttatataaataaaaacccaaaccctaaatcatttca 21956971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 42907881 - 42907820
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactca 345  Q
    |||||||||||||| || | |||||||||| ||| ||||| ||||||||||| ||||||||||    
T  42907881 agaaaatcaatttacta-ctcttttatataaatagaaactcaaaccctaaatcatttcactca 42907820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 1866559 - 1866607
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatata 262  Q
    |||||||| |||||||||||||||||||| |||| |||||  |||||||    
T  1866559 gtttttcccgatttcaaaatacgggtacgagacgggtaatgcggatata 1866607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 9929177 - 9929233
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||||||||||||||||||||||||||  | ||| |||| | ||||||| |||||||    
T  9929177 gtttttcctgatttcaaaatacgggtatagtacgggtaacatggatataggtaccca 9929233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 12075731 - 12075795
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| || ||||||||| ||| ||||| |||| || ||| ||||||| ||||    
T  12075731 agaaaatcaatttattacccattttatataaatagaaactaaaactctgaatcatttcacccaca 12075795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 25298843 - 25298891
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatata 262  Q
    |||||||| |||||||||| |||||||||||| | ||||| ||||||||    
T  25298843 gtttttccggatttcaaaacacgggtacgggatgggtaatggggatata 25298891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 29527897 - 29527841
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||| || |||||||||||||||||||| |||| ||||  |||||||| |||||||    
T  29527897 gttttccccgatttcaaaatacgggtacgtgacgggtaacggggatatatgtaccca 29527841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 43553440 - 43553408
Alignment:
Q  284 gaaaatcaatttattatcccttttatatagata 316  Q
    |||||||||||||||| ||||||||||||||||    
T  43553440 gaaaatcaatttattaccccttttatatagata 43553408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 50376451 - 50376507
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataattt 339  Q
    |||||||||||||||| ||| ||||||||| ||| ||||| |||| |||||| ||||    
T  50376451 agaaaatcaatttattttccattttatataaatagaaactaaaacgctaaattattt 50376507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 16903503 - 16903441
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||  || ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  16903503 aaaatcaatttattgccctttttatataaatataaactcaaaccctaaattatttcactcaca 16903441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 42729043 - 42729107
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||| ||||||| |||||||||||||| ||| ||||||| || |||||| ||||||||||||    
T  42729043 agaaaataaatttatcatcccttttatataaatagaaacttatacactaaatcatttcactcaca 42729107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 25154837 - 25154892
Alignment:
Q  215 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    ||||||| |||||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  25154837 tttttcccgatttcaaaacacgagtacgggacgagtaatggggatataagtaccca 25154892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 13692635 - 13692570
Alignment:
Q  283 agaaaatcaattt-attatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||| ||||||||||||||||| ||| ||||  ||||||||||| ||||||| ||||    
T  13692635 agaaaatcaattttattatcccttttatataaatagaaaccaaaaccctaaatcatttcacccaca 13692570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 36421756 - 36421692
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||||||||||||||||||||| ||||||| ||| |||||  ||| |||||| |||||| |||||    
T  36421756 agaaaatcaatttattatccctcttatataaataaaaactcgaactctaaatcatttcattcaca 36421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 39219248 - 39219184
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||| ||||||||| | |||||||||| ||| ||||| ||||||||||| ||||| ||||||    
T  39219248 agaaaattaatttattacctcttttatataaatagaaactcaaaccctaaatcatttcgctcaca 39219184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 43513130 - 43513189
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactc 344  Q
    ||||||||||||| |  | ||||||||| ||| ||||| |||||||||||||||||||||    
T  43513130 aaaatcaatttataactctttttatataaatagaaactcaaaccctaaataatttcactc 43513189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 5703275 - 5703332
Alignment:
Q  285 aaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcact 343  Q
    ||||||||||||||||  |||||||||| ||||||||| ||| ||||||| ||||||||    
T  5703275 aaaatcaatttattatatcttttatata-atataaactcaaatcctaaatcatttcact 5703332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 47644966 - 47645019
Alignment:
Q  291 aatttattatcccttttatatagatataaacttaaaccctaaataatttcactc 344  Q
    |||||||||||||||||||||| ||| ||||| | | ||||||| |||||||||    
T  47644966 aatttattatcccttttatataaatagaaactcagatcctaaatcatttcactc 47645019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 48576216 - 48576277
Alignment:
Q  282 aagaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcact 343  Q
    |||||||||||||||| |||| |||| |||| ||| || || ||||||||||| ||||||||    
T  48576216 aagaaaatcaatttataatcctttttgtataaataaaatctcaaaccctaaatcatttcact 48576277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 70173 - 70111
Alignment:
Q  215 tttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 277  Q
    ||||||||||||||| ||||||||||||||||| ||||   ||||||| ||||||| ||||||    
T  70173 tttttcctgatttcataatacgggtacgggacgggtaacgaggatatatgtacccaccccaaa 70111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 37032197 - 37032259
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactca 345  Q
    ||||||| ||||||||| || ||||||||| ||| ||||| ||||||||||| ||||||||||    
T  37032197 agaaaattaatttattacccattttatataaataaaaactcaaaccctaaatcatttcactca 37032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 40796147 - 40796209
Alignment:
Q  214 gtttttcctgatttcaaaatacgggtacgggacgtgtaatagggatataagtacccatcccaaa 277  Q
    |||||||| ||||||||||||||||||||||||| |||||  ||||| | ||||||| ||||||    
T  40796147 gtttttcc-gatttcaaaatacgggtacgggacgggtaatgaggatacatgtacccaccccaaa 40796209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 27937725 - 27937664
Alignment:
Q  286 aaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    |||| |||||||||   |||||||||| ||| |||| |||||||||||| ||||||||||||    
T  27937725 aaattaatttattacagcttttatataaatagaaacctaaaccctaaatcatttcactcaca 27937664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 772893 - 772956
Alignment:
Q  283 agaaaatcaatttattatcccttttatatagatataaacttaaaccctaaataatttcactcaca 347  Q
    ||||||||||||||||| ||||||| |||| ||| ||||| ||||| | ||| ||||||||||||    
T  772893 agaaaatcaatttatta-cccttttgtataaatagaaactcaaaccttgaatcatttcactcaca 772956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 211434 - 211387
Alignment:
Q  223 gatttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  211434 gatttcaaaatacgggtacgagacgggtaacagggatatatgtaccca 211387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 128140 - 128186
Alignment:
Q  224 atttcaaaatacgggtacgggacgtgtaatagggatataagtaccca 270  Q
    |||||| ||||||||||||||||| ||||| |||||||| |||||||    
T  128140 atttcataatacgggtacgggacgggtaatggggatatatgtaccca 128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University