View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_14 (Length: 402)
Name: NF4778_low_14
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 30463383 - 30463764
Alignment:
| Q |
1 |
ttccaaacgaaacatataaaaacaaaatctttttccaactctttttactcccccaaaattgtggttgacatcaaatctccttctctacatactctcttgg |
100 |
Q |
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| T |
30463383 |
ttccaaacgaaacacataaaaacaaaatctttttccaactctttttactcccccaaaattgtggttgacatcaaatctccttctctacatactctcttgg |
30463482 |
T |
|
| Q |
101 |
caccacttccaaaaatggcaacataaatcatatcattgctacaatttcttcactcaccaaacactccattatttgaacacacgttctctctatccttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30463483 |
caccacttccaaaaatggcaacataaatcatatcattgctacaatttcttcactcaccaaactctccattatttgaacacacgttctctctatccttcac |
30463582 |
T |
|
| Q |
201 |
aaaactatcttacaatataaaccctataccatttctaagcttttctca-nnnnnnnnctcaattttcatgtacataataagcattgcttaacgtgcaacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
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| T |
30463583 |
aaaactatcttacaatataaaccctataccatttctaagcttttctcatttttttttctcaattttcatgtac---ataagcattgcttaatgtgcaacc |
30463679 |
T |
|
| Q |
300 |
aaaaataataattcacctagctttacatattgagtttcccattttgttattattagaaagttgagtgcttgagtgtggatctaga |
384 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30463680 |
aaagataataattcacctagctttacatattgagtttcccattttgttattattagaaagttgagtacttgagtgtggatctaga |
30463764 |
T |
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