View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_18 (Length: 357)
Name: NF4778_low_18
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 3753106 - 3753452
Alignment:
| Q |
1 |
tgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgcttcagttacaaaaccaacctca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3753106 |
tgatcttggtgtgactcttgacattccctcttcaaatctaagattctttttagttagaggaagcccttttataactgcttcagttacaaaaccaacctca |
3753205 |
T |
|
| Q |
101 |
ctttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaacttaataacactcagaaatggatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753206 |
ctttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaacttaataacactcagaaatggatca |
3753305 |
T |
|
| Q |
201 |
tatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtatcatagtcattcctaataccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3753306 |
tatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccattttccggtataatccgtatcatagtcattcctaataccaa |
3753405 |
T |
|
| Q |
301 |
atttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753406 |
atttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
3753452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 4047132 - 4046786
Alignment:
| Q |
1 |
tgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgcttcagttacaaaaccaacctca |
100 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
4047132 |
tgatcttggtgtgactcttgatattccctcttcaaacctaagattctttttggttagaggaagcccttttttaactgcttcagttacaaaaccaatacct |
4047033 |
T |
|
| Q |
101 |
ctttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaacttaataacactcagaaatggatca |
200 |
Q |
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||||||||||||||| |||||| ||| ||||||||||| | || || | ||||| |||||| ||||||||||||| ||||||| ||||| |||||||| |
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| T |
4047032 |
ctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaaaaaccaaatatacccttcaactcaataacaatcagacatggatca |
4046933 |
T |
|
| Q |
201 |
tatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtatcatagtcattcctaataccaa |
300 |
Q |
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||||||||||||||||||| || ||||||||||||||||| ||| || |||| ||||||| ||||||| || |||||| || ||||| || |||| |
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| T |
4046932 |
tatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtccattttccggtattattcgtatcgcggttgttcctgattccaa |
4046833 |
T |
|
| Q |
301 |
atttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
347 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
4046832 |
tggtgagaaaattcttgataaatttagctcttgttaccctatctctg |
4046786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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