View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_19 (Length: 351)
Name: NF4778_low_19
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 26608222 - 26607884
Alignment:
| Q |
18 |
cctacaaaataagagagtccgtgaactggcatagtcctctccacgtggggtcctgaaaaactatgagctggatttccatctacttgcttttatactctta |
117 |
Q |
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| T |
26608222 |
cctacaaaataagagagtccgtgaactggcatagtcctctccacgtggggtcctgaaaaactatgagctggatttccatctacttgcttttatactctta |
26608123 |
T |
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| Q |
118 |
ttactatagaaga-ttttatttttcaaacaaatatagacattatagaatcatcaccaccaacctggcttaatttcatcaactaatttcaaccaatcactt |
216 |
Q |
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| T |
26608122 |
ttactatagaagatttttatttttcaaacaaatatagacattatagaatcatcaccaccaacctggcttaatttcatcaactaatttcaaccaatcagtt |
26608023 |
T |
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| Q |
217 |
gtcatttaaagctttcgtatagtagc----tttgtgagcccaaatatttgtttcctaacccactaaactttcataatataaagctttcacttcacattct |
312 |
Q |
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| T |
26608022 |
gttatttaaaactttagtatagtatctttgtttgtgagcccaaatatttgtttcctaacccactaaactttcataatataaagctttcacttcacattct |
26607923 |
T |
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| Q |
313 |
tttcttgtagatttctactttggggtgtcatatttcatt |
351 |
Q |
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| T |
26607922 |
tttcttgtagatttccactttggggtgtcatatttcatt |
26607884 |
T |
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