View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_20 (Length: 330)
Name: NF4778_low_20
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 3297810 - 3298117
Alignment:
| Q |
1 |
atttttgaaaagtcgcaatttctagctgttgctacacactcgtccgacaatatattgtcgcagaatcaaatacacgttgattatgtttagtttannnnnn |
100 |
Q |
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| T |
3297810 |
atttttgaaaagtcgcaatttctagttgtt--tacacactcgtctgacaatatattgccgcagaatcaaatacatgttgattatgtttagcttatttttt |
3297907 |
T |
|
| Q |
101 |
nacttttatttaaatttgtataatagaagacatgtaatttgtaaaaatgtgttcgataaatgcaacaaagatgagatgataaaagattttgaaaatattg |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3297908 |
tacttttatttaaaattgtataatagaagacatgtaatttgtaaaaatgtgttcaataaatgcaacaaagatgagatgataaaagattttgaaaatattg |
3298007 |
T |
|
| Q |
201 |
ttcatgagagtgaacaatttgtaaaaagtatataaaagctagtgagtaaaaaagttcaaagaggcaatgttgatggttcttccttacatgcctgtctttg |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3298008 |
ttcatgagagtgagcaatttgtaaaaagtatataaaagctagtgagt--aaaagttcaaagaggcaatgttgatggttcttccttacatgcctgtctttg |
3298105 |
T |
|
| Q |
301 |
gaatcacattca |
312 |
Q |
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|||||||||||| |
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| T |
3298106 |
gaatcacattca |
3298117 |
T |
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