View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_22 (Length: 315)
Name: NF4778_low_22
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 1687752 - 1687501
Alignment:
| Q |
50 |
ttcacaattaatcagatttgtcaattgtctattaatgggtcatgctaaaacaaaagatggtttccttttaatttgaacataaattaaatatctcaactaa |
149 |
Q |
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| T |
1687752 |
ttcacaattaatcagatttgtcaattgcctattaatgggtcatgctaaaacaaaagatggtttccttttaatttgaacataaattaaatatctcaactaa |
1687653 |
T |
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| Q |
150 |
tggaaacttcccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagc |
249 |
Q |
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| T |
1687652 |
tggaaacttcccaacattaatatataatggaatatgatatcaacagtgatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagc |
1687553 |
T |
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| Q |
250 |
ttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatct |
301 |
Q |
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| T |
1687552 |
ttcatgataggcttttcttatctcctcccaatacctcctcttatgttcatct |
1687501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1687814 - 1687775
Alignment:
| Q |
1 |
acaatgtcgaaatacaagactccaaaattaaggctggtct |
40 |
Q |
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| T |
1687814 |
acaatgtcgaaatacaagactccaaaattaaggctggtct |
1687775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 300
Target Start/End: Complemental strand, 41918726 - 41918623
Alignment:
| Q |
197 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
296 |
Q |
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| T |
41918726 |
gatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatgtt |
41918627 |
T |
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| Q |
297 |
catc |
300 |
Q |
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|||| |
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| T |
41918626 |
catc |
41918623 |
T |
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