View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_23 (Length: 315)
Name: NF4778_low_23
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 7540004 - 7540278
Alignment:
| Q |
23 |
gataagggtacacttcttttagctacagttggtattgggataagccaaactttattcacattactatcatgttttttgttggataaaattgggagaagga |
122 |
Q |
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| T |
7540004 |
gataagggtacacttcttttagctacagttggtattgggataagccaaactttattcacattactatcatgttttttgttggataaaattgggagaagga |
7540103 |
T |
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| Q |
123 |
ttctattattggtcagttcaggaggtgtgattttttctatgttagggttatgtgtttgttcagctatagtggagaattctaaattaggagaagaaccatt |
222 |
Q |
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| T |
7540104 |
ttctattattggtcagttcaggaggtgtgattttttctatgttagggttatgtgtttgttcagctatagtggagaattctaaattaggagaagaaccatt |
7540203 |
T |
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| Q |
223 |
atgggccataatatttactattattgttatatacattatggcaggttttaatgctattggaattggggctgtgac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7540204 |
atgggccataatatttactattattgttatatacattatggcaggttttaatgctattggaattggggctgtgac |
7540278 |
T |
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