View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_25 (Length: 286)
Name: NF4778_low_25
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 31821353 - 31821094
Alignment:
| Q |
11 |
catcatcaaaatattaaaagtcccctaatttctcctgctgctagcttgtaactttcctccactgaaattgcattttggctttcatgtgtagctcgtttca |
110 |
Q |
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| T |
31821353 |
catcatcaaaatattaaaagtcccctaatttctcctgctgctagcttgtaactttcctccactgaaattgcattttggctttcatgtgtagctcgtttca |
31821254 |
T |
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| Q |
111 |
cctgcaatattaacacagatcaatcgagttatttacatccacattgtagatgatgaaattaagatacatgtattctcacagtttaatgctgtatatattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31821253 |
cctgcaatattaacacagatcaatcgagttatttacatccacattgtagatgatgaaattaagatacatgtattctcacagtttaatgctgtatatattt |
31821154 |
T |
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| Q |
211 |
ag-nnnnnnnnnnnnnnnggctgaatatattgatgaaagtgttctactatactatatgct |
269 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31821153 |
agtttttcatttttttttggctgaatatattgatgaaagtgttctactatactatatgct |
31821094 |
T |
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