View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_28 (Length: 275)
Name: NF4778_low_28
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_28 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 7978102 - 7978349
Alignment:
| Q |
14 |
caataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacgg |
113 |
Q |
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| T |
7978102 |
caataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacgg |
7978201 |
T |
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| Q |
114 |
aattgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgctgtacta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7978202 |
aattgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgctgtacta |
7978301 |
T |
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| Q |
214 |
tgtgccttatatccatattctacattttcttgttttcctttatctaga |
261 |
Q |
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| T |
7978302 |
tgtgccttatatccatattgtacattttcttgttttcctttatctaga |
7978349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 8042542 - 8042352
Alignment:
| Q |
16 |
ataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacggaa |
115 |
Q |
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|||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
8042542 |
ataatagcaacagggaagtagcacaaagcaacaataatgtaggcaacaacaactcctttccacattggacccttagatggtttctccggtgtagacggaa |
8042443 |
T |
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| Q |
116 |
ttgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
206 |
Q |
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| T |
8042442 |
ttgttgcttggatctccagcaccacaatgtgtccagcaaaggcaaatgcaacagagccaagtgcattaaagaaataaaagacagatcctgc |
8042352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 7971171 - 7971361
Alignment:
| Q |
16 |
ataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacggaa |
115 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||| ||||| ||||||| |
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| T |
7971171 |
ataagagcaacaggaaagtagcacaaagcaacaacaatgtatgcaacaataactcctttccacattggacccttagatggtttctcaggtgtagacggaa |
7971270 |
T |
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| Q |
116 |
ttgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
206 |
Q |
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| T |
7971271 |
ttgttgcttggatctccagcaccacgttgtgtccggcaaaggcaaatgcaacagagccaagtgcattaaagaaattaaagacagatcctgc |
7971361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 8032640 - 8032455
Alignment:
| Q |
14 |
caataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacgg |
113 |
Q |
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|||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||| ||||| || || |
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| T |
8032640 |
caataatagcaacaggaaagtagcacaaagcaacaacaatgtaggcaacaacaacacctctccacattggacccttagatggtttctcaggtgtagatgg |
8032541 |
T |
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| Q |
114 |
aattgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactg |
199 |
Q |
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| T |
8032540 |
aattgttgcttggatctcgagcaccacattatgtccagcataggcaaatgcaacagagccgagtgcattaaagaaattaaagactg |
8032455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 2474 - 2652
Alignment:
| Q |
21 |
agcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgtt |
120 |
Q |
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||||||||| ||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||| ||||| |||||||||||| |
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| T |
2474 |
agcaacaggaaagtagcacacagcaacaacaatgtaggcaacaacaacacctctccacattggacccttagatggtttctcaggtgtagacggaattgtt |
2573 |
T |
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| Q |
121 |
gcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactg |
199 |
Q |
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| T |
2574 |
gcttggatctccagtaccacattgtgtccggcataggcaaacgcgatagagccaagtgcattaaagaaattaaagactg |
2652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 43854602 - 43854450
Alignment:
| Q |
14 |
caataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacgg |
113 |
Q |
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||||||||||||||||||| ||||||||||| |||||||| ||||| | | ||||||||||||||||||| |||||||||||||||| ||||| || || |
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| T |
43854602 |
caataagagcaacagggaaataacacaaagctacaacaatatatgctaataaaactcctctccacattggacccttggatggtttctctggtgtggaagg |
43854503 |
T |
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| Q |
114 |
aattgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaa |
166 |
Q |
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| T |
43854502 |
gattgttgcttgaatctccaacaccacattgtgtccagcataggcaaatgcaa |
43854450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 41381608 - 41381798
Alignment:
| Q |
16 |
ataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacggaa |
115 |
Q |
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|||| ||||||||| ||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |||| ||||||||||| ||||| || || | |
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| T |
41381608 |
ataatagcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgtagatggga |
41381707 |
T |
|
| Q |
116 |
ttgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctgc |
206 |
Q |
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|||| | ||| || || ||||||||||||||||| |||||||||||||||| || ||||||||||||||||| | |||||| | |||||| |
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| T |
41381708 |
ttgtagattgaatttccaacaccacattgtgtcctgcataggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgc |
41381798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 14198053 - 14198244
Alignment:
| Q |
14 |
caataagagcaacagggaagtaacacaaagcaacaacaatgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacgg |
113 |
Q |
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|||| |||||||| || ||||| |||||||| ||||| || || || |||| |||||||||||||||||| |||| |||||||| |||||||| || || |
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| T |
14198053 |
caatgagagcaactggaaagtagcacaaagctacaactatataggctacaatcactcctctccacattggacccttagatggtttttccggtgtagatgg |
14198152 |
T |
|
| Q |
114 |
aattgttgcttggatctctaacaccacattgtgtccagcataggcaaaagcaatagtgccaagtgcattaaagaagtcaaagactgttcctg |
205 |
Q |
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||||||||||||||| ||||||||||| |||||||| ||||| |||||||| | | ||||| ||||| ||||| ||||||| ||||||| |
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| T |
14198153 |
aattgttgcttggatttctaacaccacgttgtgtccggcataagcaaaagccacatctccaagggcattgaagaaaccaaagacagttcctg |
14198244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 360575 - 360707
Alignment:
| Q |
53 |
tgtatgcaacaacaactcctctccacattggaaccttggatggtttctccggtgtcgacggaattgttgcttggatctctaacaccacattgtgtccagc |
152 |
Q |
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|||||||||||||||| |||||||||||||| || ||||| ||||| || || || || | ||| ||||| ||||||| |||||| | ||||| || |
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| T |
360575 |
tgtatgcaacaacaacacctctccacattggtactttggaaggtttttcttctgaagagggtaatgtagcttgaatctctagaaccacactatgtccggc |
360674 |
T |
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| Q |
153 |
ataggcaaaagcaatagtgccaagtgcattaaa |
185 |
Q |
| |
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| ||||||| || || || |||||||||||||| |
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| T |
360675 |
aaaggcaaacgctattgttccaagtgcattaaa |
360707 |
T |
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