View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_3 (Length: 551)
Name: NF4778_low_3
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 49911089 - 49910551
Alignment:
| Q |
1 |
ccaagctcagctaagagcatgtcccagtcccattgtaaatgcaaaagcaaaacaaagtcttcaatcccaatc-ccaaagttgaatgcaatgttattctca |
99 |
Q |
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| T |
49911089 |
ccaagctcagctaagagcatgtcccagtcccattgtaaatgcaaaagcaaaacaaagtcttcaatcccaatttccaaagttgaatgcaatgttattctca |
49910990 |
T |
|
| Q |
100 |
tcctcctctcccatttccaaaacaacnnnnnnngatatactaatactacttgtacaagactatactcatggattgatatatcatgaggagataattaaac |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910989 |
tcctcctctcccatttccaaaacaacaaaaaaagatatactaatactacttgtacaagactatactcatggattgatatatcatgaggagataattaaac |
49910890 |
T |
|
| Q |
200 |
atgcagccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgc----nnnnnnnnnnnnngctactctgttgttgaatgaa----- |
290 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49910889 |
atgcaaccagctagctcacctcagctcagctgctcttttcaagcataaaagcactgctatatatatatatatatgcta--ctgttgttgaatgaatgaat |
49910792 |
T |
|
| Q |
291 |
---ttgaatttagctggcattttcaaatacaaacacactttttgtaattccctccctctccctcctcaacccactcactctcattctcactgccagccaa |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910791 |
gaattgaatttagctggcattttcaaatacaaacacactttttgtaattccctccctctccctcctcaacccactcactctcattctcactgccagccaa |
49910692 |
T |
|
| Q |
388 |
gagtgaattagcaaggctgggacacccacaccaactgtattctgtactacacacccaacctacgcacgcagtttttgcttttctctccaaaacattaaca |
487 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49910691 |
gagtgaattagcaaggctgggacacccacactaacagtattctgtactacacacccaacctacgcacgcagtttttgcttttctctccaaaacattaaca |
49910592 |
T |
|
| Q |
488 |
accaacgtttcttttgtctctcctctactattccgtataca |
528 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49910591 |
accaacgtttcttttgtctctcctccactattccgtataca |
49910551 |
T |
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