View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_32 (Length: 263)
Name: NF4778_low_32
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 23896430 - 23896196
Alignment:
| Q |
12 |
agaacctgtggttatcgatgacattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
111 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23896430 |
agaacctgtggttatcgatggcattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
23896331 |
T |
|
| Q |
112 |
gtcattcacccttgcttccaccccgagaatagggtaaaatctttttctttcgattattatcattactattgctattattggacacgtaaaaacttactct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23896330 |
gtcattcacccttgcttccaccccgagaatagggtaaaatctttttctttcgattattatcattactattgctattattggacacgtaaaaacttacttg |
23896231 |
T |
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| Q |
212 |
aactatttatttgattgcttgcagccatctcctac |
246 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
23896230 |
aaccatttatttgattgcttgcagccatctcctac |
23896196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 23184396 - 23184163
Alignment:
| Q |
12 |
agaacctgtggttatcgatgacattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
111 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23184396 |
agaaccagtggttatcgatggcattcaaatccctgtcaacacaagtatgaaaaaccctaacaacaatgaatacgacaacctttaccttgacatgaacggc |
23184297 |
T |
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| Q |
112 |
gtcattcacccttgcttccaccccgagaatagggtaaaatctttttctttcgattattatcattactattgctattattggacacgtaaaaacttactct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||| | |
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| T |
23184296 |
gtcattcacccttgcttccaccccgagaatagggtaaaatatttctctttcgattattatgattactattgctattattagacacgtaaaaacgtact-t |
23184198 |
T |
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| Q |
212 |
aactatttatttgattgcttgcagccatctcctac |
246 |
Q |
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|| ||||||||||||||||||||||||||||||| |
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| T |
23184197 |
gacgatttatttgattgcttgcagccatctcctac |
23184163 |
T |
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