View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_33 (Length: 262)
Name: NF4778_low_33
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 28168363 - 28168130
Alignment:
| Q |
20 |
taatggaatccaataaatttt-gacaattttcatcttacggtttttattagacttagtagctattagttgacaagcttcacatatgttattattattaac |
118 |
Q |
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| T |
28168363 |
taatggaatccaataaatttttgacaattttcatcttacggtttttattagagttagtagctattagttgacaagcttcacatatgttattattattaac |
28168264 |
T |
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| Q |
119 |
atcattaaacacaccttgcaattcttcatgcaggttttccatgtaacaatgaggtagcatcctaagctaaattcacttatttgcaacttgttgcatcatt |
218 |
Q |
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| T |
28168263 |
atcattaaacacactttacaattcttcatgcaggttttccatgtaacaatgaggtagcatcctaagctaaattcacttatttgcaacttgttgcatcatt |
28168164 |
T |
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| Q |
219 |
aacaaataccattcgtattattggacctctcatt |
252 |
Q |
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| T |
28168163 |
aacaaataccattcgtattattggacctctcatt |
28168130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 28172008 - 28171787
Alignment:
| Q |
20 |
taatggaatccaataaattttgacaattttcatcttacggtttttattagacttagtagctattagttgacaagcttcacatatgttattattattaaca |
119 |
Q |
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||||||| ||||||||| ||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||| ||||||||| | |||||| |||| |
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| T |
28172008 |
taatggagtccaataaagtttgacaattttcttctcacggttttcattagagttagtagctattagttgacaaccttcacatagg---ctattatcaaca |
28171912 |
T |
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| Q |
120 |
tcattaaacacaccttgcaattcttcatgcaggttttccatgtaacaatgaggtagcatcctaagctaaattcacttatttgc-aacttgttgcatcatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |
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| T |
28171911 |
tcattaaacacaccttgcaattcttcatgcaggtattccatgtaacaatgaggtagcatcctaaactaaattcacctatttgcaaacttgttgcatcatt |
28171812 |
T |
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| Q |
219 |
aacaaataccattcgtattattgga |
243 |
Q |
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||||||||||||||||||||||||| |
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| T |
28171811 |
aacaaataccattcgtattattgga |
28171787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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