View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_34 (Length: 257)
Name: NF4778_low_34
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 11169878 - 11170107
Alignment:
| Q |
11 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
110 |
Q |
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| T |
11169878 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
11169977 |
T |
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| Q |
111 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
210 |
Q |
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| T |
11169978 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg |
11170077 |
T |
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| Q |
211 |
gtaggaatcgtggtattcctaggaattatt |
240 |
Q |
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| T |
11170078 |
gtaggaatcgtggtattcctaggaattatt |
11170107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 11208700 - 11208929
Alignment:
| Q |
11 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag |
110 |
Q |
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| T |
11208700 |
cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag |
11208799 |
T |
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| Q |
111 |
caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt |
209 |
Q |
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| T |
11208800 |
caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt |
11208898 |
T |
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| Q |
210 |
ggtaggaatcgtggtattcctaggaattatt |
240 |
Q |
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| T |
11208899 |
ggtaggaatcgtggtattcctaggaattatt |
11208929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 11275272 - 11275402
Alignment:
| Q |
21 |
taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg |
120 |
Q |
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| T |
11275272 |
taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg |
11275371 |
T |
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| Q |
121 |
tccttagttatttgcctctcaccctcataaa |
151 |
Q |
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| T |
11275372 |
tccttagttgttttcctctcaccctcataaa |
11275402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
| Q |
82 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
154 |
Q |
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| T |
11196117 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
11196189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
| Q |
109 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
158 |
Q |
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| T |
11155697 |
agcaagttgttttccctagttattttcctctcaccttcataaacatgaat |
11155746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
| Q |
105 |
tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata |
165 |
Q |
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| T |
11132411 |
tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata |
11132471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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