View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778_low_38 (Length: 250)

Name: NF4778_low_38
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778_low_38
NF4778_low_38
[»] chr8 (33 HSPs)
chr8 (1-250)||(44633661-44633922)
chr8 (43-173)||(39567063-39567193)
chr8 (1-171)||(39568395-39568564)
chr8 (43-172)||(45378476-45378605)
chr8 (43-173)||(39270722-39270852)
chr8 (43-170)||(44632709-44632836)
chr8 (104-173)||(9311021-9311090)
chr8 (118-173)||(14816570-14816625)
chr8 (118-173)||(14829115-14829170)
chr8 (1-100)||(39269492-39269592)
chr8 (104-170)||(9312165-9312231)
chr8 (85-168)||(22191876-22191958)
chr8 (122-173)||(45377427-45377478)
chr8 (107-173)||(10134608-10134674)
chr8 (95-173)||(22013932-22014010)
chr8 (95-173)||(43633123-43633201)
chr8 (120-173)||(13463153-13463206)
chr8 (87-139)||(21015213-21015265)
chr8 (95-173)||(2221594-2221672)
chr8 (87-173)||(9115601-9115687)
chr8 (95-173)||(9739765-9739843)
chr8 (95-173)||(11713200-11713278)
chr8 (95-173)||(22013462-22013540)
chr8 (95-173)||(27786465-27786543)
chr8 (95-173)||(31445669-31445747)
chr8 (95-173)||(41154617-41154695)
chr8 (95-173)||(41154994-41155072)
chr8 (95-173)||(42193779-42193857)
chr8 (95-173)||(45123220-45123298)
chr8 (136-173)||(14819391-14819428)
chr8 (88-173)||(22594318-22594403)
chr8 (95-172)||(40229091-40229168)
chr8 (87-155)||(2633803-2633871)
[»] chr4 (35 HSPs)
chr4 (1-173)||(35060340-35060511)
chr4 (1-173)||(702537-702708)
chr4 (1-173)||(756487-756658)
chr4 (1-173)||(770836-771007)
chr4 (43-173)||(35055333-35055463)
chr4 (1-171)||(16039565-16039734)
chr4 (61-173)||(701633-701745)
chr4 (61-173)||(769932-770044)
chr4 (43-173)||(757427-757557)
chr4 (82-173)||(16038275-16038366)
chr4 (103-173)||(36220588-36220658)
chr4 (104-173)||(11038577-11038646)
chr4 (107-173)||(51645963-51646029)
chr4 (85-172)||(4890827-4890915)
chr4 (107-172)||(36219408-36219473)
chr4 (105-173)||(40681491-40681559)
chr4 (95-173)||(31487978-31488056)
chr4 (95-172)||(1098376-1098453)
chr4 (85-173)||(4892081-4892169)
chr4 (104-152)||(51399237-51399285)
chr4 (106-173)||(41845501-41845568)
chr4 (95-173)||(1098053-1098131)
chr4 (87-173)||(14525909-14525995)
chr4 (95-173)||(17475397-17475475)
chr4 (95-173)||(17475863-17475941)
chr4 (95-173)||(20614596-20614674)
chr4 (87-173)||(22679633-22679719)
chr4 (95-173)||(25618436-25618514)
chr4 (95-173)||(41610127-41610205)
chr4 (95-173)||(42369489-42369567)
chr4 (87-173)||(53594984-53595070)
chr4 (95-173)||(56271196-56271274)
chr4 (104-169)||(50551403-50551468)
chr4 (106-170)||(9086290-9086354)
chr4 (125-173)||(11039740-11039788)
[»] chr6 (26 HSPs)
chr6 (2-173)||(21282817-21282987)
chr6 (43-171)||(5659106-5659235)
chr6 (1-173)||(5660078-5660249)
chr6 (43-173)||(21611915-21612045)
chr6 (65-167)||(21612831-21612933)
chr6 (104-173)||(29744781-29744850)
chr6 (104-173)||(29751129-29751198)
chr6 (87-173)||(20489413-20489498)
chr6 (116-173)||(14403688-14403745)
chr6 (105-173)||(12260446-12260514)
chr6 (114-171)||(17971846-17971903)
chr6 (87-172)||(20488261-20488346)
chr6 (112-173)||(29465755-29465816)
chr6 (112-173)||(29467282-29467343)
chr6 (95-170)||(18683553-18683628)
chr6 (134-173)||(21283922-21283961)
chr6 (107-173)||(959309-959375)
chr6 (95-173)||(3618781-3618859)
chr6 (95-173)||(17383735-17383813)
chr6 (95-173)||(21271486-21271564)
chr6 (95-173)||(21272099-21272177)
chr6 (95-173)||(22498747-22498825)
chr6 (87-173)||(28866392-28866478)
chr6 (95-173)||(31739895-31739973)
chr6 (1-34)||(21612775-21612808)
chr6 (105-173)||(20745585-20745653)
[»] chr7 (29 HSPs)
chr7 (1-173)||(21709158-21709330)
chr7 (43-172)||(26024888-26025017)
chr7 (1-173)||(26025753-26025924)
chr7 (61-173)||(21710547-21710659)
chr7 (85-171)||(10990568-10990654)
chr7 (93-173)||(10986695-10986775)
chr7 (107-173)||(45088244-45088310)
chr7 (112-173)||(40738193-40738254)
chr7 (107-171)||(45087067-45087131)
chr7 (112-171)||(19543492-19543551)
chr7 (95-173)||(3217734-3217812)
chr7 (95-173)||(45457084-45457162)
chr7 (94-151)||(14682973-14683030)
chr7 (105-173)||(30766674-30766742)
chr7 (87-170)||(38030332-38030413)
chr7 (102-173)||(26041802-26041873)
chr7 (106-173)||(43704945-43705012)
chr7 (95-173)||(7776937-7777015)
chr7 (95-173)||(27284242-27284320)
chr7 (95-173)||(27284589-27284667)
chr7 (95-173)||(31852062-31852140)
chr7 (95-173)||(36951056-36951134)
chr7 (95-173)||(39143491-39143569)
chr7 (95-173)||(40852140-40852218)
chr7 (95-173)||(45456734-45456812)
chr7 (106-171)||(42287313-42287378)
chr7 (105-173)||(23440909-23440977)
chr7 (105-173)||(37374447-37374515)
chr7 (105-173)||(47987327-47987395)
[»] scaffold0031 (3 HSPs)
scaffold0031 (1-173)||(123424-123595)
scaffold0031 (1-173)||(134300-134471)
scaffold0031 (43-173)||(129347-129477)
[»] chr3 (33 HSPs)
chr3 (1-172)||(21815909-21816080)
chr3 (43-172)||(21817328-21817457)
chr3 (85-173)||(14859103-14859191)
chr3 (104-173)||(27688486-27688555)
chr3 (105-173)||(39992484-39992552)
chr3 (116-173)||(20184448-20184505)
chr3 (116-173)||(27695576-27695633)
chr3 (106-171)||(39991507-39991572)
chr3 (105-173)||(32304232-32304300)
chr3 (102-173)||(20185800-20185871)
chr3 (94-173)||(40503711-40503790)
chr3 (107-173)||(43464812-43464878)
chr3 (95-173)||(45940660-45940738)
chr3 (88-173)||(36982651-36982735)
chr3 (88-173)||(37008090-37008174)
chr3 (106-170)||(49221510-49221574)
chr3 (94-169)||(27990252-27990326)
chr3 (87-138)||(28919124-28919175)
chr3 (95-173)||(12739964-12740042)
chr3 (107-173)||(13301948-13302014)
chr3 (107-173)||(13312604-13312670)
chr3 (95-173)||(13355175-13355253)
chr3 (95-173)||(24242977-24243055)
chr3 (107-173)||(24244765-24244831)
chr3 (87-165)||(50530625-50530703)
chr3 (103-173)||(52857273-52857343)
chr3 (94-152)||(54831876-54831934)
chr3 (96-173)||(12740335-12740412)
chr3 (120-173)||(17509464-17509517)
chr3 (95-172)||(39198418-39198495)
chr3 (120-173)||(42540163-42540216)
chr3 (87-139)||(4953405-4953457)
chr3 (105-173)||(45940215-45940283)
[»] chr1 (46 HSPs)
chr1 (1-173)||(16962010-16962181)
chr1 (1-173)||(51599320-51599491)
chr1 (43-173)||(16963354-16963484)
chr1 (43-173)||(51597961-51598091)
chr1 (104-173)||(46015846-46015915)
chr1 (108-172)||(50682580-50682644)
chr1 (107-170)||(33333404-33333467)
chr1 (112-173)||(6241253-6241314)
chr1 (88-173)||(24326582-24326667)
chr1 (88-173)||(24332287-24332372)
chr1 (104-173)||(46014701-46014770)
chr1 (105-173)||(15073917-15073985)
chr1 (98-173)||(47113097-47113172)
chr1 (95-173)||(6714683-6714761)
chr1 (107-173)||(33332177-33332243)
chr1 (112-173)||(6242694-6242755)
chr1 (88-152)||(29021603-29021667)
chr1 (105-173)||(36143125-36143193)
chr1 (88-160)||(52750175-52750247)
chr1 (106-173)||(7964113-7964180)
chr1 (88-171)||(31697117-31697200)
chr1 (95-173)||(3798324-3798402)
chr1 (95-173)||(3798690-3798768)
chr1 (87-173)||(5804693-5804779)
chr1 (87-173)||(6328302-6328388)
chr1 (107-173)||(10719356-10719422)
chr1 (107-173)||(10719625-10719691)
chr1 (95-173)||(14244166-14244244)
chr1 (95-173)||(14244540-14244618)
chr1 (95-173)||(24370115-24370193)
chr1 (87-173)||(35368856-35368941)
chr1 (95-173)||(37483054-37483132)
chr1 (95-173)||(37708192-37708270)
chr1 (95-173)||(38979671-38979749)
chr1 (95-173)||(38980034-38980112)
chr1 (95-173)||(44114498-44114576)
chr1 (95-173)||(46448721-46448799)
chr1 (95-173)||(50138495-50138573)
chr1 (95-173)||(50227894-50227972)
chr1 (107-172)||(32193987-32194052)
chr1 (95-172)||(46448218-46448295)
chr1 (107-171)||(13834713-13834777)
chr1 (88-160)||(29022522-29022594)
chr1 (105-173)||(32193517-32193585)
chr1 (94-162)||(35369322-35369390)
chr1 (105-173)||(45678712-45678780)
[»] chr2 (24 HSPs)
chr2 (87-173)||(36889719-36889805)
chr2 (87-173)||(36888338-36888424)
chr2 (117-173)||(35738363-35738419)
chr2 (105-173)||(7184881-7184949)
chr2 (103-173)||(34166843-34166914)
chr2 (95-173)||(43820308-43820386)
chr2 (107-172)||(13809426-13809491)
chr2 (104-173)||(13810569-13810636)
chr2 (87-173)||(15044739-15044825)
chr2 (95-173)||(26424804-26424882)
chr2 (120-173)||(3603504-3603557)
chr2 (105-170)||(40468049-40468114)
chr2 (85-173)||(5381536-5381624)
chr2 (105-173)||(19297527-19297595)
chr2 (112-172)||(3607036-3607098)
chr2 (95-173)||(4602797-4602875)
chr2 (94-152)||(8885679-8885737)
chr2 (107-173)||(20686669-20686735)
chr2 (95-173)||(33200028-33200106)
chr2 (95-173)||(34618502-34618580)
chr2 (87-173)||(39109475-39109561)
chr2 (120-173)||(8028966-8029019)
chr2 (103-152)||(38978912-38978961)
chr2 (105-173)||(32194819-32194887)
[»] scaffold0029 (2 HSPs)
scaffold0029 (107-173)||(71821-71887)
scaffold0029 (106-173)||(70669-70736)
[»] scaffold0394 (1 HSPs)
scaffold0394 (104-173)||(14270-14340)
[»] scaffold0220 (1 HSPs)
scaffold0220 (87-173)||(25963-26049)
[»] chr5 (26 HSPs)
chr5 (106-173)||(19718881-19718948)
chr5 (88-173)||(25333161-25333246)
chr5 (88-152)||(37192445-37192509)
chr5 (88-152)||(38384889-38384953)
chr5 (95-173)||(16669506-16669584)
chr5 (87-173)||(30112682-30112768)
chr5 (88-173)||(30645700-30645785)
chr5 (104-152)||(35463861-35463909)
chr5 (107-170)||(1983550-1983613)
chr5 (95-173)||(435554-435632)
chr5 (107-173)||(4959561-4959627)
chr5 (95-173)||(16670008-16670086)
chr5 (95-173)||(17339795-17339873)
chr5 (95-173)||(24100680-24100758)
chr5 (95-173)||(27851023-27851101)
chr5 (95-173)||(29962161-29962239)
chr5 (95-173)||(30012559-30012637)
chr5 (87-173)||(30644914-30645000)
chr5 (95-173)||(38312325-38312403)
chr5 (94-152)||(42766838-42766896)
chr5 (111-168)||(9378728-9378785)
chr5 (106-139)||(14662662-14662695)
chr5 (112-173)||(37966814-37966875)
chr5 (105-173)||(6793767-6793835)
chr5 (88-152)||(37191614-37191678)
chr5 (107-171)||(42381204-42381268)
[»] scaffold0194 (2 HSPs)
scaffold0194 (107-173)||(19237-19303)
scaffold0194 (107-171)||(18070-18134)
[»] scaffold0054 (2 HSPs)
scaffold0054 (87-173)||(57530-57616)
scaffold0054 (87-173)||(57022-57107)
[»] scaffold0006 (1 HSPs)
scaffold0006 (95-173)||(83366-83444)
[»] scaffold0259 (1 HSPs)
scaffold0259 (88-154)||(12061-12127)
[»] scaffold0150 (1 HSPs)
scaffold0150 (88-154)||(38901-38967)
[»] scaffold0002 (1 HSPs)
scaffold0002 (95-173)||(283154-283232)
[»] scaffold0430 (1 HSPs)
scaffold0430 (112-168)||(6233-6289)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 44633661 - 44633922
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44633661 caatgcgaaaatgacacgtgtgcttgagttaacgttttttt-aataaaattaacggaagagaccaatttatgtaaaagagacatatttaaaggactcaaa 44633759  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc--------nnnnnnngt-ctactctt- 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |               || ||||||||     
T  44633760 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaaccaaaatagcaattaagacaaaaaaaaaaaaaaagtactactctta 44633859  T
Q  191 ---aataaatatactcaaaatatcaattacgcttgaacttgaaaagtatgaaactacagagaa 250  Q
       |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  44633860 ataaataaatatactcaaaatatcaattacgcttgaatttgaaaagtatgaaactaaagagaa 44633922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 39567193 - 39567063
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  39567193 aataaaattgacggaagggaccaatttatgtaacagagacatatttaaaggactcaaatgaactttttatcaattatgggaccaaagcgataccaaaaaa 39567094  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||| ||||||||| ||||||||||    
T  39567093 ttagttaagggacgaaaataacaattaagcc 39567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 39568395 - 39568564
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||   |||||||||||||||  |||||||||||||||||||||||    
T  39568395 caatgcgaaaatgacacgtgtgcttgagttaacgttttttt-aataaaattaacggaatggaccaatttatgtaacggagacatatttaaaggactcaaa 39568493  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
     |||||||||||||||||||| |||||| |||||| |||||||||||||||| || |||||||||||||||    
T  39568494 caaactttttattaattatggaaccaaaacgatactaaaaaattagttaagggacaaaaatagcaattaag 39568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 45378476 - 45378605
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    |||||||||||||||  |||||||||||| ||| |||| ||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||    
T  45378476 aataaaattaacggaatagaccaatttatataatagaggcatatttaaaggactgaaacataatttttattaattatgggaccaaagcgataccaaaaaa 45378575  T
Q  143 ttagttaaggaacgaaaatagcaattaagc 172  Q
    ||| |||||| |||||||||||||||||||    
T  45378576 ttatttaagggacgaaaatagcaattaagc 45378605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 39270722 - 39270852
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | |||||||||||||||   ||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||    
T  39270722 aataaaattgacggaagggaccaatttatgtaatgtagacatatttaaaggactcaaacggactttttattaattatgggaccaaaacgataccaaaaaa 39270821  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    | |||||||| ||||||||||||||||||||    
T  39270822 taagttaagggacgaaaatagcaattaagcc 39270852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 44632836 - 44632709
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||||||||| |  || |||||||||||  |||||||||||||||||||||||  || |||||||||||| |||||||||| |||||||||||||    
T  44632836 aataaaattaacggaaggaactaatttatgtaacggagacatatttaaaggactcaaacgaattttttattaattttgggaccaaaacgataccaaaaaa 44632737  T
Q  143 ttagttaaggaacgaaaatagcaattaa 170  Q
    ||| |||||  |||||||||||||||||    
T  44632736 ttaattaagagacgaaaatagcaattaa 44632709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 9311090 - 9311021
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||    
T  9311090 acttttttttagttatgggaccaaagcgataccaaaaaattagataagggactaaaatagcaattaagcc 9311021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 14816625 - 14816570
Alignment:
Q  118 atgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  14816625 atgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14816570  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 14829115 - 14829170
Alignment:
Q  118 atgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  14829115 atgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 39269592 - 39269492
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatt--tatgtaaaagagacatatttaaaggactca 98  Q
    ||||||||||||||||||||||||| ||||||||        ||||||||||||||| ||||||||||  |||||||  |||||||||||||||||||||    
T  39269592 caatgcgaaaatgacacgtgtgcttaagttaacgttttttt-aataaaattaacggaagagaccaatttatatgtaacggagacatatttaaaggactca 39269494  T
Q  99 aa 100  Q
    ||    
T  39269493 aa 39269492  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 9312165 - 9312231
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||| | || ||||||||||||||    
T  9312165 acttttttttagttatgggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaa 9312231  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 22191876 - 22191958
Alignment:
Q  85 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatt 168  Q
    ||||||| |||||||| | ||||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||| |||||    
T  22191876 atttaaaagactcaaacagactttttattacttacgggaccaaagcgatactaaaaaa-tacttaagggacgaaaataacaatt 22191958  T

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Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 45377478 - 45377427
Alignment:
Q  122 gaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||||| | |||||| ||||||||| ||||||||||    
T  45377478 gaccaaagcgataccaaaaaatcaattaagggacgaaaataacaattaagcc 45377427  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 10134674 - 10134608
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||||||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  10134674 ttttattacttatgggaccaaagcgataccaaataaatacttaagggacaaaaagagcatttaagcc 10134608  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 22013932 - 22014010
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  22013932 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagcc 22014010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 43633201 - 43633123
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  43633201 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagcc 43633123  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 13463153 - 13463206
Alignment:
Q  120 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  13463153 gggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 13463206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 21015213 - 21015265
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaa 139  Q
    |||| |||| |||| | ||||||||||| ||||||||||||||||||||||||    
T  21015213 ttaagggacccaaacagactttttattacttatgggaccaaagcgataccaaa 21015265  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 2221672 - 2221594
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  2221672 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 2221594  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 9115687 - 9115601
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| | ||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || ||||||||| |||||||    
T  9115687 ttaaagtattcaaacaatcttttttttagttaggggaccaaagcgataccaactaaatacttaagggaccaaaatagcatttaagcc 9115601  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 9739765 - 9739843
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  9739765 ctcaaagaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 9739843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 11713278 - 11713200
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  11713278 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 11713200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 22013540 - 22013462
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  22013540 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 22013462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 27786465 - 27786543
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27786465 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27786543  T

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Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 31445747 - 31445669
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31445747 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31445669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 41154695 - 41154617
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  41154695 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 41154617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 41154994 - 41155072
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  41154994 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 41155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 42193857 - 42193779
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  42193857 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 42193779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 45123298 - 45123220
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45123298 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45123220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 14819391 - 14819428
Alignment:
Q  136 caaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||||||| || |||||||||||||||||    
T  14819391 caaaaaattagttaagggactaaaatagcaattaagcc 14819428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 22594403 - 22594318
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| | || |||||||    
T  22594403 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaagggaccaaaagaacatttaagcc 22594318  T

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Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 40229168 - 40229091
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| ||||||    
T  40229168 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagc 40229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 2633803 - 2633871
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaac 155  Q
    |||||| ||||||| || |||||| ||||||| ||||||||||||||| |||  || || |||||||||    
T  2633803 ttaaagtactcaaacaatcttttttttaattaagggaccaaagcgataacaattaaatacttaaggaac 2633871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 35060340 - 35060511
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||| ||||||||||||||||||||||||| |        ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  35060340 caatgcaaaaatgacacgtgtgcttgagttaatgttttttt-aataaaattaacggaagggaccaatttatgtaacagagacatatttaaaggactcaaa 35060438  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35060439 cggactttttattaattatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 35060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 702537 - 702708
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||     
T  702537 caatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaag 702635  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  702636 cggactttttattaattatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 702708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 756658 - 756487
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||     
T  756658 caatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaag 756560  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  756559 cggactttttattaattatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 756487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 770836 - 771007
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||     
T  770836 caatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaag 770934  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  770935 cggactttttattaattatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 35055463 - 35055333
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35055463 aataaaattgacggaggggaccaatttatgtaacagagacatatttaaaggactcaaatggactttttattaattatgggaccaaagcgataccaaaaaa 35055364  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||| ||||||||| ||||||||||    
T  35055363 ttagttaagggacgaaaataacaattaagcc 35055333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 16039565 - 16039734
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||| ||||| |||||||||||        ||||||||||||||| | |||||||||||||||  |||||||||||||||||||||||    
T  16039565 caatgcgaaaatgacatgtgtgtttgagttaacgttttttt-aataaaattaacggaagggaccaatttatgtaatggagacatatttaaaggactcaaa 16039663  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
       |||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||    
T  16039664 cggactttttattaattatgggaccgaaacgataccaaaaaattagttaagggacaaaaatagcaattaag 16039734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 701745 - 701633
Alignment:
Q  61 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 160  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  701745 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaataagttaagggacgaaaa 701646  T
Q  161 tagcaattaagcc 173  Q
    |||||||||||||    
T  701645 tagcaattaagcc 701633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 770044 - 769932
Alignment:
Q  61 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 160  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  770044 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaataagttaagggacgaaaa 769945  T
Q  161 tagcaattaagcc 173  Q
    |||||||||||||    
T  769944 tagcaattaagcc 769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 757427 - 757557
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| |  || |||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  757427 aataaaattgacggaaggaactaatttatgtaacggagacatatttaaaggactcaaactgactttttattaattatgggaccaaagcgataccaaaaaa 757526  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    | |||||||| | ||||||||||||||||||    
T  757527 taagttaagggatgaaaatagcaattaagcc 757557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 16038366 - 16038275
Alignment:
Q  82 catatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  16038366 catatttaaaggactcaaatggattttttattaattatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcc 16038275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 36220588 - 36220658
Alignment:
Q  103 aactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  36220588 aacttttttttagttatgggaccaaaacgataccaaaaaattagttaaggtactaaaatagcaattaagcc 36220658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 11038646 - 11038577
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||    
T  11038646 acttttttttagttatgggaccaaagcaataccaaaaaattagctaagggactaaaatagcaattaagcc 11038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 51645963 - 51646029
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||    
T  51645963 tttttttagttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcc 51646029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 4890915 - 4890827
Alignment:
Q  85 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaa-aaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||||||||||||||| |||| |||||||| |||| ||  ||||||||||| ||| ||| || |||||| |||||||||||||||||||    
T  4890915 atttaaaggactcaaacaaaccttttattacttataggggcaaagcgatactaaagaaactacttaagggacgaaaatagcaattaagc 4890827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 36219473 - 36219408
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||| ||| ||||||||||||| ||||||  ||||||||||||||| || ||||||||||||||||    
T  36219473 tttttttagttatgggaccaaaccgatactcaaaaattagttaagggactaaaatagcaattaagc 36219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 40681491 - 40681559
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  40681491 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 40681559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 31488056 - 31487978
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31488056 ctcaaataatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31487978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 1098376 - 1098453
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||||    
T  1098376 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagc 1098453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 4892081 - 4892169
Alignment:
Q  85 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||||| | |  |||||||| ||||| |||| ||||||||| ||||||  | |||||| | ||||||||||||||||||    
T  4892081 atttaagggactcaaacagatcttttattacttatgcgacctaagcgatactaaaaaaaaacttaagggatgaaaatagcaattaagcc 4892169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 51399285 - 51399237
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||||||||| |||||||||||||||||||||||| || || ||||||    
T  51399285 actttttattacttatgggaccaaagcgataccaaataaatatttaagg 51399237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 41845568 - 41845501
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||| ||| |||||||||||||||||||  |||||||||||| || |||| |||| |||||||    
T  41845568 ttttttttagttaagggaccaaagcgataccaattaattagttaagggaccaaaagagcatttaagcc 41845501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 1098131 - 1098053
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  1098131 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 1098053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 14525909 - 14525995
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| |  |||| |||| |||||||    
T  14525909 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggatcaaaagagcatttaagcc 14525995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 17475475 - 17475397
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17475475 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 17475397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 17475863 - 17475941
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17475863 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 17475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 20614596 - 20614674
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  20614596 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 20614674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 22679719 - 22679633
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| ||||| |||||||||||||  || ||||||||| || |||| |||| |||||||    
T  22679719 ttaaagtactcaaacaatcttttttttagttaagggactaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 22679633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 25618514 - 25618436
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  25618514 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 25618436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 41610205 - 41610127
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  41610205 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 41610127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 42369489 - 42369567
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  42369489 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 42369567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 53595070 - 53594984
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||| | || ||||| ||| |||||||    
T  53595070 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaaaggaccaaaatggcatttaagcc 53594984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 56271196 - 56271274
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  56271196 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 56271274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 50551403 - 50551468
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatta 169  Q
    ||||||| ||| |||||| || ||| |||||||||||||||| |||||| || |||||| ||||||    
T  50551403 acttttttttagttatggaactaaaccgataccaaaaaattaattaagggactaaaataacaatta 50551468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 9086354 - 9086290
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    ||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| || ||||||    
T  9086354 ttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagaaattaa 9086290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 11039740 - 11039788
Alignment:
Q  125 caaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||||||||||||||||||||   || |||||||||||||||||    
T  11039740 caaagtgataccaaaaaattagttaaatgactaaaatagcaattaagcc 11039788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 21282987 - 21282817
Alignment:
Q  2 aatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaat 101  Q
    |||||||||||||||| ||||||||||||||||        ||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||     
T  21282987 aatgcgaaaatgacacatgtgcttgagttaacgttttttt-aataaaattaacggaagggaccaatttatgtaacagagacatatttaaaagactcaaac 21282889  T
Q  102 aaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    | |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  21282888 agactttttattaattatgggaccaaagcgatacaaaaaaattaattaagggacgaaaatagcaattaagcc 21282817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 5659235 - 5659106
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  5659235 aataaaattaacggaaggagccaatttatgtaacagagacatatttaaaggactcaaacagactttttattaattatgggaccaaagtgataccaaaaaa 5659136  T
Q  143 ttagttaaggaacg-aaaatagcaattaag 171  Q
    |||||||||| ||| |||||||||||||||    
T  5659135 ttagttaagggacgaaaaatagcaattaag 5659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5660078 - 5660249
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    ||||| |||||||||||||||||||||||||||         ||||||||||||||| |  |||||||||||||| |||||||||||||||||| |||||    
T  5660078 caatgtgaaaatgacacgtgtgcttgagttaacatattttttaataaaattaacggaaggaaccaatttatgtaacagagacatatttaaaggattcaaa 5660177  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       |||||| |||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||    
T  5660178 cggactttt-attaattatgagaccaaaacgataccaaaaaattagtttagggacgaaaatagcaattaagcc 5660249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 21612045 - 21611915
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    |||||||||||| || | |||||| |||||||| |||||||||||||||| |||||||   | ||||||||||||||||||||||| |||||||||||||    
T  21612045 aataaaattaactgaagggaccaaattatgtaacagagacatatttaaagaactcaaacggattttttattaattatgggaccaaatcgataccaaaaaa 21611946  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||| ||||||||||||||||||||    
T  21611945 ttagttaagggacgaaaatagcaattaagcc 21611915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 21612831 - 21612933
Alignment:
Q  65 aatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagc 164  Q
    ||||| |||||  ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |    
T  21612831 aatttttgtaacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaaacgataccaaaaaattaattaagggacgaaaataac 21612930  T
Q  165 aat 167  Q
    |||    
T  21612931 aat 21612933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 29744850 - 29744781
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  29744850 acttttttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 29744781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 29751129 - 29751198
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  29751129 acttttttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 29751198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 20489413 - 20489498
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||| | ||||||||||| ||||||||||||||| |||| ||||||  |  ||||| || |||||||||||||||||    
T  20489413 ttaaaggactcaaacatactttttattacttatgggaccaaagcaatactaaaaaa-aacataagggactaaaatagcaattaagcc 20489498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 14403745 - 14403688
Alignment:
Q  116 ttatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||| |||||||| ||||||| ||||| || |||||||||||||||||    
T  14403745 ttatgggaccaaagtgataccaacaaattaggtaagggactaaaatagcaattaagcc 14403688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 12260514 - 12260446
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  12260514 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 12260446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 17971846 - 17971903
Alignment:
Q  114 aattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||| |||||||||||||||| |  ||| ||||||||||||||||||| ||||||||    
T  17971846 aattaagggaccaaagcgatactactaaaatagttaaggaacgaaaatatcaattaag 17971903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 20488346 - 20488261
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||||||||| ||| ||||||||||||| |||| | ||||||||||||| |||||  || |||||  || |||||| |||||||||    
T  20488346 ttaaaggactgaaacaaactttttattacttatagaaccaaagcgatactaaaaatatacttaagagactaaaataacaattaagc 20488261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 29465816 - 29465755
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| |||||| ||||| ||  |||||||||||| ||||||||||||||||||||    
T  29465816 ttaattaaggggccaaagtgatactaattaattagttaagggacgaaaatagcaattaagcc 29465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 29467282 - 29467343
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||  |||||||||| |||| ||| || ||||||||| ||||||||||||||||||||    
T  29467282 ttaattaaaggaccaaagcaatactaaataaatagttaagggacgaaaatagcaattaagcc 29467343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 18683628 - 18683553
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||    
T  18683628 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaactaaaagagcatttaa 18683553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 21283922 - 21283961
Alignment:
Q  134 accaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  21283922 accaaaaaattagttaagggacgaaaataacaattaagcc 21283961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 959309 - 959375
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||||||||||||||||| ||||| || || |||||| || |||| |||| |||||||    
T  959309 ttttattacttatgggaccaaagcgatcccaaataaatacttaagggaccaaaagagcatttaagcc 959375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 3618859 - 3618781
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3618859 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggactaaaaaagcatttaagcc 3618781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 17383813 - 17383735
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17383813 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 17383735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 21271564 - 21271486
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  21271564 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 21271486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 21272099 - 21272177
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  21272099 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 21272177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 22498747 - 22498825
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  22498747 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 22498825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 28866392 - 28866478
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||||  || |||| |||| |||||||    
T  28866392 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatatttaagagaccaaaagagcatttaagcc 28866478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 31739895 - 31739973
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31739895 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31739973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21612775 - 21612808
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacg 34  Q
    |||||||||||||||| |||||||||||||||||    
T  21612775 caatgcgaaaatgacatgtgtgcttgagttaacg 21612808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 20745653 - 20745585
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||| ||||||||||||||| ||| | |||||| ||||||| || |||||||||    
T  20745653 cttttttttacttaagggatcaaagcgataccaaataataacttaagggacgaaaagagtaattaagcc 20745585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 21709330 - 21709158
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||| |||||||||||||||||||||||||||        ||||||||||||||| | |||||||||||||||   |||||||||||||||||| |||    
T  21709330 caatgcaaaaatgacacgtgtgcttgagttaacgttttttttaataaaattaacggaagggaccaatttatgtaacgaagacatatttaaaggacttaaa 21709231  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  21709230 cggactttttattaattatgggaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagcc 21709158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 26025017 - 26024888
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | |||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  26025017 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaagcgataccaaaaaa 26024918  T
Q  143 ttagttaaggaacgaaaatagcaattaagc 172  Q
    | |||||||| ||||| |||||||||||||    
T  26024917 taagttaagggacgaagatagcaattaagc 26024888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 26025753 - 26025924
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||     
T  26025753 caatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagagaccaatttatgtaacggagacatatttaaaggactcaag 26025851  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       |||||||||||||||||| | |||||| ||||||| ||||||||||| | || |||||||||||||||||    
T  26025852 cggactttttattaattatggaatcaaagcaataccaagaaattagttaaaggacaaaaatagcaattaagcc 26025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 21710547 - 21710659
Alignment:
Q  61 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 160  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||    
T  21710547 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaataagttaagggacaaaaa 21710646  T
Q  161 tagcaattaagcc 173  Q
    || ||||| ||||    
T  21710647 tatcaattcagcc 21710659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 10990568 - 10990654
Alignment:
Q  85 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    |||||||||||||||| | ||||||||||| |||||||| ||||||||||| |||||| ||  ||||  |||||||||| |||||||    
T  10990568 atttaaaggactcaaacagactttttattacttatgggatcaaagcgatactaaaaaaatacataagagacgaaaatagtaattaag 10990654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 10986775 - 10986695
Alignment:
Q  93 gactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||||||||||| |||||| ||| |||| ||||||||||||| ||||||||| ||||||| || |||||||||    
T  10986775 gacttaaacaaactttttatcaattataggagcaaaacgataccaaaaaaatagttaagggacgaaaagagaaattaagcc 10986695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 45088244 - 45088310
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| |||||||||||||  ||||||||| |||||||||||| || |||||||||||||||||    
T  45088244 tttttttagttatgggaccaaactgataccaaacaattagttaagggactaaaatagcaattaagcc 45088310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 40738254 - 40738193
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| |||||||||||||||| ||  |||||||| ||| ||||||||||||||||||||    
T  40738254 ttaattaagggaccaaagcgatactaattaattagttgagggacgaaaatagcaattaagcc 40738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 45087131 - 45087067
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||| | || |||||| ||||||||    
T  45087131 tttttttagttatgggaccaaaccgataccaaaaaattagttaaaggactaaaataacaattaag 45087067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 19543551 - 19543492
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||||| |||| ||||||||||| ||| || ||||||||| ||||||||||||||||||    
T  19543551 ttaattaagggatcaaagcgatactaaataaatagttaagggacgaaaatagcaattaag 19543492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 3217734 - 3217812
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||| |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3217734 ctcaaataatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 3217812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 45457084 - 45457162
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45457084 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45457162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 14682973 - 14683030
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaag 151  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||| || ||||||||    
T  14682973 actcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaag 14683030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 30766674 - 30766742
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||| ||||||||| ||| | |||||| ||||||| ||||||||||||    
T  30766674 cttttttttacttaagggaccaaagtgataccaaataataacttaagggacgaaaaaagcaattaagcc 30766742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 38030413 - 38030332
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    |||||||| | ||||| ||||||||||| |||||||| ||||||||||| ||||||  |  ||||| |||||||||| ||||||    
T  38030413 ttaaaggattgaaatagactttttattacttatgggatcaaagcgatactaaaaaa--acgtaagggacgaaaatagaaattaa 38030332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 26041802 - 26041873
Alignment:
Q  102 aaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| |||||||| |||| ||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  26041802 aaaccttttattacttataggaccaaagcgataccaaataaatatttaagggaccaaaagagcatttaagcc 26041873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 43705012 - 43704945
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  43705012 ttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagcc 43704945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 7776937 - 7777015
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  7776937 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 7777015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 27284320 - 27284242
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27284320 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27284242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 27284589 - 27284667
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27284589 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27284667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 31852062 - 31852140
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  31852062 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 31852140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 36951134 - 36951056
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||| |||||| ||| ||| || ||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  36951134 ctcaaataatcttttttttagttaaggaaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 36951056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 39143491 - 39143569
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  39143491 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 39143569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 40852140 - 40852218
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  40852140 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 40852218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 45456812 - 45456734
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45456812 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45456734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 42287378 - 42287313
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||    
T  42287378 tttttcttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaag 42287313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 23440909 - 23440977
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || |||||||||||  |||| |||| |||||||    
T  23440909 cttttttttagttaagggaccaaagcgataccaattaaatagttaaggaatcaaaagagcatttaagcc 23440977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 37374447 - 37374515
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  37374447 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 37374515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 47987395 - 47987327
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  47987395 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 47987327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 123595 - 123424
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||     
T  123595 caatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggactcaag 123497  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  123496 cggactttttattaattatgggaccaaagcaataccaagaaattagttaagggacgaaaatagcaattaagcc 123424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 134471 - 134300
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||     
T  134471 caatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggactcaag 134373  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  134372 cggactttttattaattatgggaccaaagcaataccaagaaattagttaagggacgaaaatagcaattaagcc 134300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 129347 - 129477
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||||    
T  129347 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagtgataccaaaaaa 129446  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    | |||||||| ||||||||| ||||||||||    
T  129447 taagttaagggacgaaaataacaattaagcc 129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 21816080 - 21815909
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaagg-actcaa 99  Q
    |||||| |||||||||||||||||||||||||||        ||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||    
T  21816080 caatgcaaaaatgacacgtgtgcttgagttaacgttttttt-aataaaattaacggaagggaccaatttatgtaacagagacatatttaaagggactcaa 21815982  T
Q  100 ataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |   |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  21815981 acggactttttattaattatggaaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagc 21815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 21817328 - 21817457
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||||||||| | ||| || |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  21817328 aataaaattaacggaagggactaagttatgtaacagagacatatttaaaggactcaaacagactttttattaattatgggaccaaagcgataccaaaaaa 21817427  T
Q  143 ttagttaaggaacgaaaatagcaattaagc 172  Q
    |||||||||| | |||||||| ||||||||    
T  21817428 ttagttaagggatgaaaatagtaattaagc 21817457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 14859103 - 14859191
Alignment:
Q  85 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| |||||||||| ||||||||||| |||||| ||||||||||||| |||||| || |||||| | ||||||||||||||||||    
T  14859103 atttaaatgactcaaatagactttttattacttatggaaccaaagcgatactaaaaaaatatttaagggaagaaaatagcaattaagcc 14859191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 27688555 - 27688486
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  27688555 acttttttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 27688486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 39992484 - 39992552
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||||||||| |||| |||||||||||||||||||||| || ||||||| |||||||||    
T  39992484 cttttttttaattatgggacaaaagtgataccaaaaaattagttaagggactaaaatagtaattaagcc 39992552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 20184505 - 20184448
Alignment:
Q  116 ttatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||    
T  20184505 ttatgggaccaaaccgataccaaaaaattagttaagggactaaaataacaattaagcc 20184448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 27695576 - 27695633
Alignment:
Q  116 ttatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||| |||||||||| |||||||||||| || |||||||||||||||||    
T  27695576 ttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 27695633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 39991572 - 39991507
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||| ||| |||||||| |||| ||||| |||||||||||||||||||| |||||| ||||||||    
T  39991572 ttttttttagttatgggatcaaaacgatatcaaaaaattagttaaggaactaaaataacaattaag 39991507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 32304300 - 32304232
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  32304300 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 32304232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 20185800 - 20185871
Alignment:
Q  102 aaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||| ||| |||||||| |||| |||||| |||||||||| ||| | || |||||||||||||||||    
T  20185800 aaacttttttttagttatgggatcaaaccgatacaaaaaaattaggtaatggactaaaatagcaattaagcc 20185871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 40503711 - 40503790
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| ||||||||||||    
T  40503711 actcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcaattaagcc 40503790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 43464878 - 43464812
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||||||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  43464878 ttttattacttatgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 43464812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 45940660 - 45940738
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  45940660 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 45940738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 36982735 - 36982651
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||| ||  |||||  | |||||| |||||||||| |||| ||||    
T  36982735 taaaggactcaaacagactttttattacttatgggaccaaagcgacacttaaaaa-aaattaagggacgaaaatagaaattgagcc 36982651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 37008174 - 37008090
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||| ||  |||||  | |||||| |||||||||| |||| ||||    
T  37008174 taaaggactcaaacagactttttattacttatgggaccaaagcgacacttaaaaa-aaattaagggacgaaaatagaaattgagcc 37008090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 49221574 - 49221510
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    ||||| ||| ||||||||| ||  ||||||||||||||||||||||| || |||||| |||||||    
T  49221574 ttttttttagttatgggactaacccgataccaaaaaattagttaagggacaaaaataacaattaa 49221510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 27990252 - 27990326
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatta 169  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| ||||||||    
T  27990252 actcaaataatcttttt-ttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcaatta 27990326  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 28919175 - 28919124
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaa 138  Q
    |||||| ||||||| || |||||| ||||||| |||||||||||||||||||    
T  28919175 ttaaagtactcaaacaatcttttttttaattaagggaccaaagcgataccaa 28919124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 12740042 - 12739964
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  12740042 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 12739964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 13301948 - 13302014
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  13301948 ttttattacttacgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 13302014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 13312604 - 13312670
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  13312604 ttttattacttacgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 13312670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 13355253 - 13355175
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| | || |||||||    
T  13355253 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggactaaaagaacatttaagcc 13355175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 24242977 - 24243055
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  24242977 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 24243055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 24244765 - 24244831
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||||| | ||||||||||||||| || || |||||| || ||||||||| |||||||    
T  24244765 ttttattacttatggtatcaaagcgataccaaataaatacttaagggaccaaaatagcatttaagcc 24244831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 50530703 - 50530625
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagca 165  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||||||||    
T  50530703 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggactaaaatagca 50530625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 52857273 - 52857343
Alignment:
Q  103 aactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  52857273 aacttttttttatttaagggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 52857343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 54831934 - 54831876
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||||| || |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  54831934 actcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 54831876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 12740335 - 12740412
Alignment:
Q  96 tcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||| | ||| ||| ||||||| |||||||||||  || || |||||||||||||| |||| |||||||    
T  12740335 tcaaataatctttcttttagttaagggaccatagcgataccaattaaataattaaggaacgaaaagagcatttaagcc 12740412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 17509517 - 17509464
Alignment:
Q  120 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||| ||| | |||||| ||||||| | ||||||||||    
T  17509517 gggaccaaagcgataccaaataataacttaagggacgaaaagaacaattaagcc 17509464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 39198495 - 39198418
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || || |||||| || ||||||| | ||||||    
T  39198495 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaataattaagggaccaaaatagtatttaagc 39198418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 42540216 - 42540163
Alignment:
Q  120 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||| ||| | |||||| ||||||| || |||||||||    
T  42540216 gggaccaaagcgataccaaataataacttaagggacgaaaagagtaattaagcc 42540163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 4953405 - 4953457
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaa 139  Q
    |||| ||||| ||| | ||||||||||| ||||||||||||| ||||||||||    
T  4953405 ttaagggacttaaacagactttttattacttatgggaccaaaacgataccaaa 4953457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 45940283 - 45940215
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45940283 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45940215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 16962181 - 16962010
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||| ||||||||||||||||         ||||||||||||||| | |||||||||||||||   ||||||||||||||||||||||    
T  16962181 caatgcgaaaatgacatgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacgaagacatatttaaaggactcaaa 16962083  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
     | |||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||||    
T  16962082 cagactttttattaattataggaccaaagcaataccaaaaaattagttaagggacaaaaatagcaattaagcc 16962010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 51599320 - 51599491
Alignment:
Q  1 caatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaa 100  Q
    |||||||||||||||| |||||||||||||||||        ||||||||||||||| | |||||||||||||||   |||||||||||||| |||||||    
T  51599320 caatgcgaaaatgacatgtgtgcttgagttaacgttttttt-aataaaattaacggaagggaccaatttatgtaacgaagacatatttaaagaactcaaa 51599418  T
Q  101 taaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
       |||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51599419 cggactttttattaattataggatcaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 51599491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 16963354 - 16963484
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | ||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  16963354 aataaaattgacggaagggaccagtttatgtaacggagacatatttaaaggactcaaatgaactttttattaattatgagaccaaatcgataccaaaaaa 16963453  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||| ||||||||||    
T  16963454 ttagttaaggaacgaaaataacaattaagcc 16963484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 51598091 - 51597961
Alignment:
Q  43 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaa 142  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  51598091 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagcgataccaaaaaa 51597992  T
Q  143 ttagttaaggaacgaaaatagcaattaagcc 173  Q
    | |||||||| ||||||||||||||||||||    
T  51597991 taagttaagggacgaaaatagcaattaagcc 51597961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 46015846 - 46015915
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||    
T  46015846 acttttttttagttatgggaccaaagcgataccaaaaaattacttaagggactaaaataacaattaagcc 46015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 50682580 - 50682644
Alignment:
Q  108 tttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    ||||||| ||||||||||||||||||||||||||| || |||||| || ||||||||||||||||    
T  50682580 tttattatttatgggaccaaagcgataccaaaaaaataattaagggaccaaaatagcaattaagc 50682644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 33333404 - 33333467
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    |||| |||||||||||||||||  |||||||||||||||||||||| || ||||||||||||||    
T  33333404 tttttttaattatgggaccaaactgataccaaaaaattagttaagggactaaaatagcaattaa 33333467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 6241314 - 6241253
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| |||||||||||||||| ||| || |||||||||||||||||||| |||||||||    
T  6241314 ttaattaagggaccaaagcgatactaaataaatagttaaggaacgaaaatagaaattaagcc 6241253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 24326667 - 24326582
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| |||||||||| |||||| ||| ||| |||||||||||||||||||| || ||||||||| || |||| |||| |||||||    
T  24326667 taaagtactcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaagggaccaaaagagcatttaagcc 24326582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 24332287 - 24332372
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| |||||||||| |||||| ||| ||| |||||||||||||||||||| || ||||||| | || |||| |||| |||||||    
T  24332287 taaagtactcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaaaggaccaaaagagcatttaagcc 24332372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 46014770 - 46014701
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| |||||||| | ||||||||||||||||||||||||   || |||||||||||||||||    
T  46014770 acttttttttagttatgggatcgaagcgataccaaaaaattagttaaatgactaaaatagcaattaagcc 46014701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 15073917 - 15073985
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || |||||||||||| ||||||||| |||||||    
T  15073917 cttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaatagcatttaagcc 15073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 47113097 - 47113172
Alignment:
Q  98 aaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| |||||| ||| ||| |||| ||||||||||||||| ||| | |||||| ||||||| ||||||||||||    
T  47113097 aaataatcttttttttacttaagggatcaaagcgataccaaataataacttaagggacgaaaagagcaattaagcc 47113172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 6714683 - 6714761
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  6714683 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 6714761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 33332243 - 33332177
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||||||||||||| |||||||||| || ||||||||  || |||||||||||||||||    
T  33332243 tttttttagttatgggaccaaaccgataccaaacaactagttaagagactaaaatagcaattaagcc 33332177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 6242694 - 6242755
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| |||||||||||||||| ||  |||||||||||| | ||||||| ||||||||||    
T  6242694 ttaattaagggaccaaagcgatactaattaattagttaagggatgaaaatatcaattaagcc 6242755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 29021667 - 29021603
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  29021667 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 29021603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 36143125 - 36143193
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| ||||||||| |||||||||| ||| | |||||| ||||||| ||||||||||||    
T  36143125 cttttttttacttaagggaccaaatcgataccaaataataacttaagggacgaaaagagcaattaagcc 36143193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 52750247 - 52750175
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 160  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || ||||| |||||| ||||    
T  52750247 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttgaggaaccaaaa 52750175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 7964180 - 7964113
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||| ||| |||||||||||||||||||| || ||||||||| || |||| |||| |||||||    
T  7964180 ttttttttagttaagggaccaaagcgataccaaataaatagttaagggaccaaaagagcatttaagcc 7964113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 31697200 - 31697117
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||| ||||||||||  ||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||    
T  31697200 taaagtactcaaataattttttttttagttaagggaccaaagcgataccaaataaatatttaagggaccaaaagagcatttaag 31697117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 3798402 - 3798324
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3798402 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 3798324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 3798690 - 3798768
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  3798690 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 3798768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 5804779 - 5804693
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| || |||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  5804779 ttaaagtactgaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 5804693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 6328302 - 6328388
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||| ||||||||||||    
T  6328302 ttaaagtactgaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggaccaaaagagcaattaagcc 6328388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 10719422 - 10719356
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||||||||||||||||||| ||| || || |||||| || |||| |||| |||||||    
T  10719422 ttttattatttatgggaccaaagcgatactaaataaatacttaagggaccaaaagagcatttaagcc 10719356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 10719625 - 10719691
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| |||||| ||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  10719625 ttttattacttatggaaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 10719691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 14244244 - 14244166
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| ||||||||||||||| |||  || |||||||||||| |||| |||| |||||||    
T  14244244 ctcaaacaatcttttttttagttaagggaccaaagcgatatcaattaaatagttaaggaaccaaaagagcatttaagcc 14244166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 14244540 - 14244618
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  14244540 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 14244618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 24370193 - 24370115
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  24370193 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 24370115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 35368941 - 35368856
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| ||| ||||| ||||||| |||||||||||||||||||  || || |||||| || |||| |||| |||||||    
T  35368941 ttaaagtactcaaacaaatttttt-ttaattaagggaccaaagcgataccaattaaatatttaagggaccaaaagagcatttaagcc 35368856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 37483132 - 37483054
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  37483132 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 37483054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 37708270 - 37708192
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || || ||||||||| |||| |||| |||||||    
T  37708270 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaataattaaggaaccaaaagagcatttaagcc 37708192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 38979749 - 38979671
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  38979749 ctcaaacaatcttttttttagttaagggaccaaagcgataccaatgaaatagttaagggaccaaaagagcatttaagcc 38979671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 38980034 - 38980112
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  38980034 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 38980112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 44114498 - 44114576
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  44114498 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 44114576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 46448721 - 46448799
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  46448721 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 46448799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 50138573 - 50138495
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  50138573 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 50138495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 50227894 - 50227972
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  50227894 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 50227972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 32193987 - 32194052
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| ||||||    
T  32193987 tttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagc 32194052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 46448295 - 46448218
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| ||||||    
T  46448295 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagc 46448218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 13834777 - 13834713
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||| |||||| ||||||||| ||| || ||||||| ||||||||||| |||| || |||||||    
T  13834777 ttttaataattaagggaccaaaacgaaacaaaaaaataagttaaggaaccaaaagagtaattaag 13834713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 29022522 - 29022594
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaa 160  Q
    ||||| ||| ||| || |||||| ||| ||| |||||||||| ||||||||| || |||||||||||| ||||    
T  29022522 taaagtacttaaacaatcttttttttagttaagggaccaaagtgataccaaataaatagttaaggaaccaaaa 29022594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 32193585 - 32193517
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| |||||||||||||||||||  || ||||||||| |  |||| |||| |||||||    
T  32193585 cttttttttaattaagggaccaaagcgataccaattaaatagttaagggattaaaagagcatttaagcc 32193517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 35369322 - 35369390
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaata 162  Q
    ||||||| || |||||||||||||| |||| |||||||||| |||  || || ||||||||| ||||||    
T  35369322 actcaaacaatctttttattaattaagggatcaaagcgatatcaattaaatacttaaggaaccaaaata 35369390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 45678780 - 45678712
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  45678780 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 45678712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 36889719 - 36889805
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  36889719 ttaaaggattcaaatagactttttattaattatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcc 36889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 36888424 - 36888338
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||    
T  36888424 ttaaaggactcaaacagactttttattagttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcc 36888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 35738419 - 35738363
Alignment:
Q  117 tatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35738419 tatggaaccaaagcgataccaaaaaattagttaaggaacgaaaatagtaattaagcc 35738363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 7184949 - 7184881
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| |||||||| |||| ||||||||||||||||||||||  || |||||||||||||||||    
T  7184949 cttttttttagttatgggatcaaaccgataccaaaaaattagttaagagactaaaatagcaattaagcc 7184881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 34166914 - 34166843
Alignment:
Q  103 aactttttattaattatgggaccaaagcgataccaa-aaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||||| |||  |||||||| |||| || |||||| ||||||||||||||||||||    
T  34166914 aactttttattaattatgggacaaaactgataccaaaaaaaatatttaagggacgaaaatagcaattaagcc 34166843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 43820308 - 43820386
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| ||||||||| |||||||    
T  43820308 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaatagcatttaagcc 43820386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 13809491 - 13809426
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagc 172  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||  | ||||||| ||||||||    
T  13809491 tttttttaattataggatcaaagcgataccaaaaaattagttaagggcctaaaatagaaattaagc 13809426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 13810569 - 13810636
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| |||||||||||||||||||||  |||||||||||||  || ||||| |||||||||||    
T  13810569 acttttttttagttatgggaccaaagcgatacc--aaaattagttaagagactaaaattgcaattaagcc 13810636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 15044825 - 15044739
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| |||  ||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  15044825 ttaaagtactcaaacaatcttttttttagttaaaggaccaaagcgataccaattaaatagttaagggaccaaaatagcacttaagcc 15044739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 26424804 - 26424882
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||||||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  26424804 ctcaaacaatcttttttttaattaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 26424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 3603557 - 3603504
Alignment:
Q  120 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||| ||| || ||||||||| ||||||||| ||||||||||    
T  3603557 gggaccaaagcgatactaaataaatagttaagggacgaaaataacaattaagcc 3603504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 40468114 - 40468049
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    |||||| ||| ||| |||||||||||||||||||| ||| | |||||| ||||||| |||||||||    
T  40468114 cttttttttacttaagggaccaaagcgataccaaataataacttaagggacgaaaagagcaattaa 40468049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 5381624 - 5381536
Alignment:
Q  85 atttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||| |||| |||||||    
T  5381624 atttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggaccaaaagagcatttaagcc 5381536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 19297595 - 19297527
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| ||||||||| |||||||||| ||| | |||||| ||||||| ||||||||||||    
T  19297595 cttttttttacttaagggaccaaaacgataccaaataataacttaagggacgaaaagagcaattaagcc 19297527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 3607036 - 3607098
Alignment:
Q  112 ttaattatgggaccaaagcgataccaa--aaaattagttaaggaacgaaaatagcaattaagc 172  Q
    ||||||| || | ||||||||||| ||  ||||||| ||||||||||||||||||||||||||    
T  3607036 ttaattaaggaatcaaagcgatactaattaaaattaattaaggaacgaaaatagcaattaagc 3607098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 4602797 - 4602875
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  4602797 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 4602875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 8885737 - 8885679
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    |||||||||| |||||| ||| ||| |||||||||||||||||||| || || ||||||    
T  8885737 actcaaataatcttttttttagttaagggaccaaagcgataccaaataaatacttaagg 8885679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 20686669 - 20686735
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||| ||||||||||| |||||||| ||| | |||||| ||||||| ||||||||||||    
T  20686669 tttttttacttaagggaccaaagcaataccaaataataacttaagggacgaaaaaagcaattaagcc 20686735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 33200106 - 33200028
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||| | || ||||||||| |||||||    
T  33200106 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaaggaccaaaatagcatttaagcc 33200028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 34618502 - 34618580
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  34618502 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggactaaaagagcatttaagcc 34618580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 39109475 - 39109561
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || || | |||| |||||||    
T  39109475 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaatagagcatttaagcc 39109561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 8029019 - 8028966
Alignment:
Q  120 gggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||||||||||||||||| ||| | |||||  ||| ||||||||||||||||    
T  8029019 gggaccaaagcgataccaaataataacttaagagacggaaatagcaattaagcc 8028966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 38978912 - 38978961
Alignment:
Q  103 aactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||||||||||  ||||||||||||||||||||||| || || ||||||    
T  38978912 aactttttattacatatgggaccaaagcgataccaaataaatatttaagg 38978961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 32194819 - 32194887
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  32194819 cttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 32194887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 71821 - 71887
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  71821 tttttttagttatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 71887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 70736 - 70669
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||    
T  70736 ttttttttagttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcc 70669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 14340 - 14270
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaa-ttagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||| ||| ||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||    
T  14340 acttttttttagttatgggaccaaaccgataccaaaaaaattagttaagggactaaaatagcaattaagcc 14270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 26049 - 25963
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||||| ||| ||||||||||||| |||||||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  26049 ttaagggacttaaacaaactttttattacttatgggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 25963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 19718881 - 19718948
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||| |||| ||| |||||||||||||||||||||||||| | || |||||||||||||||||    
T  19718881 ttttttttagttataggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaagcc 19718948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 25333161 - 25333246
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||||||| || |||||| |||||||  ||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  25333161 taaagtactcaaacaatcttttttttaattaaaggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 25333246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 37192445 - 37192509
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||| |||||||||| |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  37192445 taaagtactcaaataatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 37192509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 38384953 - 38384889
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||| ||||||| || |||||| ||||||| |||||||||||||||||||| || |||||||||    
T  38384953 taaagtactcaaacaatcttttttttaattaagggaccaaagcgataccaaataaatagttaagg 38384889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 16669584 - 16669506
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || |||||||||||| |||| |||| |||||||    
T  16669584 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaagagcatttaagcc 16669506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 30112682 - 30112768
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || || |||||| || |||| ||||||||||||    
T  30112682 ttaaagaactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatacttaagggactaaaagagcaattaagcc 30112768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 30645700 - 30645785
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || |||||| || |||| |||| |||||||    
T  30645700 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaagggaccaaaagagcatttaagcc 30645785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 35463861 - 35463909
Alignment:
Q  104 actttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||||||||| |||||||||||||||||||||||| || || ||||||    
T  35463861 actttttattacttatgggaccaaagcgataccaaataaatatttaagg 35463909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 1983550 - 1983613
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaa 170  Q
    |||||||| |||||||||||||||||||| ||| || || ||||||||| |||| |||| ||||    
T  1983550 ttttattacttatgggaccaaagcgatactaaataaatacttaaggaaccaaaagagcatttaa 1983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 435632 - 435554
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  435632 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 435554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 4959627 - 4959561
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||| |||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  4959627 tttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 4959561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 16670008 - 16670086
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  16670008 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 16670086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 17339873 - 17339795
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  17339873 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaaaagcatttaagcc 17339795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 24100680 - 24100758
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  24100680 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 24100758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 27851023 - 27851101
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  27851023 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 27851101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 29962161 - 29962239
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  29962161 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 29962239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 30012637 - 30012559
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  30012637 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 30012559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 30645000 - 30644914
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| ||||||| |||||||||||| || || |||||| || |||| |||| |||||||    
T  30645000 ttaaagtactcaaacaatcttttttttagttaagggaccatagcgataccaaataaatatttaagggaccaaaagagcatttaagcc 30644914  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 38312403 - 38312325
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  38312403 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 38312325  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 42766896 - 42766838
Alignment:
Q  94 actcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||||| || |||||| ||| ||| |||||||||||||||||||| || |||||||||    
T  42766896 actcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatagttaagg 42766838  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 9378728 - 9378785
Alignment:
Q  111 attaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatt 168  Q
    |||||||||| |||||||| |||||||||||| ||||||| | || ||| ||||||||    
T  9378728 attaattatgcgaccaaagtgataccaaaaaaatagttaatggaccaaattagcaatt 9378785  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 14662662 - 14662695
Alignment:
Q  106 tttttattaattatgggaccaaagcgataccaaa 139  Q
    ||||||||| ||||||||||||||||||||||||    
T  14662662 tttttattacttatgggaccaaagcgataccaaa 14662695  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 37966875 - 37966814
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    ||||||||||||||||||  |||| ||  || ||||||||| ||||||||| ||||||||||    
T  37966875 ttaattatgggaccaaagtaatactaattaaatagttaagggacgaaaataacaattaagcc 37966814  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 6793835 - 6793767
Alignment:
Q  105 ctttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||| ||| |||||||||| ||||||||| ||| | |||||| || |||| ||||||||||||    
T  6793835 cttttttttacttaagggaccaaagtgataccaaataataacttaagggacaaaaagagcaattaagcc 6793767  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 37191678 - 37191614
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaagg 152  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| ||  ||||||||    
T  37191678 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaacagttaagg 37191614  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 42381268 - 42381204
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    ||||| || ||| ||||||||| ||| |||||||||| ||||||||||| |||| || |||||||    
T  42381268 ttttaatagttaagggaccaaaacgaaaccaaaaaataagttaaggaaccaaaagagtaattaag 42381204  T

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Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 19237 - 19303
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||||||| ||| || ||||||||||    
T  19237 tttttttagttatgggaccaaaccgatatcaaaaaattagttaaggaactaaagtaacaattaagcc 19303  T

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Target: scaffold0194; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 18134 - 18070
Alignment:
Q  107 ttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaag 171  Q
    |||| ||| ||||| ||||||| ||||||  ||||||||||||||| || ||||||| |||||||    
T  18134 tttttttagttatgagaccaaaccgatactcaaaaattagttaagggactaaaatagtaattaag 18070  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 57530 - 57616
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| | ||||||||||    
T  57530 ttaaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagaacaattaagcc 57616  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 57107 - 57022
Alignment:
Q  87 ttaaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| ||||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| | ||||||||||    
T  57107 ttaaagtactcaaacaatcttttt-ttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagaacaattaagcc 57022  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 83366 - 83444
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || ||||||||| |||||||    
T  83366 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcc 83444  T

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Target: scaffold0259 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 12127 - 12061
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaa 154  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || ||||||||    
T  12127 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaaggaa 12061  T

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Target: scaffold0150 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 38967 - 38901
Alignment:
Q  88 taaaggactcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaa 154  Q
    ||||| ||||||| || |||||| ||| ||| |||||||||||||||||||| || || ||||||||    
T  38967 taaagtactcaaacaatcttttttttagttaagggaccaaagcgataccaaataaatacttaaggaa 38901  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 283154 - 283232
Alignment:
Q  95 ctcaaataaactttttattaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaattaagcc 173  Q
    |||||| || |||||| ||| ||| |||||||||||||||||||  || ||||||||| || |||| |||| |||||||    
T  283154 ctcaaacaatcttttttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaagagcatttaagcc 283232  T

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Target: scaffold0430 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 6233 - 6289
Alignment:
Q  112 ttaattatgggaccaaagcgataccaaaaaattagttaaggaacgaaaatagcaatt 168  Q
    |||||||||||| ||||||||||| ||  || ||||||||  |||||||||||||||    
T  6233 ttaattatgggatcaaagcgatactaattaaatagttaagagacgaaaatagcaatt 6289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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