View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_42 (Length: 237)
Name: NF4778_low_42
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 41659882 - 41660096
Alignment:
| Q |
20 |
aaggacttttgaacaaacataaatggtctatgtcgaaaatttccaaaaagaatatgctaagttttaaaattaggcgtgaaatgactatgtttttcat--- |
116 |
Q |
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| T |
41659882 |
aaggacttttgaacaaacataaatggtatatgtcgaaaatttccaaaaagaatatgctaagttttaaaattaggcgtgaaatgactatatttttcatatt |
41659981 |
T |
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| Q |
117 |
--------tggagagaagttaaaatgagtcatcattatattttcatcataaatttattcaatgcataaaattaaaaaacattcaacttatatgaaagatt |
208 |
Q |
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| T |
41659982 |
aattaaattggagagaagttaaaatgagtcatcattatattttcatcataaatttattcaatgcataaaattaaaaaacattcaacttatatgaaagatt |
41660081 |
T |
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| Q |
209 |
catcatgttgttcat |
223 |
Q |
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||||||||||||||| |
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| T |
41660082 |
catcatgttgttcat |
41660096 |
T |
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