View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_43 (Length: 232)
Name: NF4778_low_43
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_43 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 37147105 - 37146863
Alignment:
| Q |
7 |
caatcgacccaacataaaaagaaacacaaaatacacgatcaatttat----ggatagtgagattca------------ctaaaattaaaattagctacc- |
89 |
Q |
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| T |
37147105 |
caatcgacccaacataaaaagaaatacaaaatacacgatcaatttatatatggatagtgagattcaaacccgcggtcactaaaattaaaattagctaccc |
37147006 |
T |
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| Q |
90 |
taactgactaatatatattttagtttttcaaaattaagttaatattctgatattttcactagaattttgcaggtatttccctgatggtattgatgtttac |
189 |
Q |
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| T |
37147005 |
taattgattaatatatattttagtttttcaaaattaagttaatattctgatattttcactagaattttgcaggtatttccctgatggtattgatgtttac |
37146906 |
T |
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| Q |
190 |
cttgacaatgttggtggtaaaatgctcgaatctgtacttaacc |
232 |
Q |
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| T |
37146905 |
cttgacaatgttggtggtaaaatgctcgaatctgtacttaacc |
37146863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 37153014 - 37152929
Alignment:
| Q |
147 |
actagaattttgcaggtatttccctgatggtattgatgtttaccttgacaatgttggtggtaaaatgctcgaatctgtacttaacc |
232 |
Q |
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| T |
37153014 |
actagaattttgcaggtattttcctgatggtattgatgtttaccttgacaatgttggtggtaaaatgcttgaagctgtacttaacc |
37152929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 37159254 - 37159125
Alignment:
| Q |
104 |
atattttagtttttcaaaattaagttaatattctgatattttc-actagaattttgcaggtatttccctgatggtattgatgtttaccttgacaatgttg |
202 |
Q |
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| T |
37159254 |
atattttagttttagaaaattaagttaacttcctaatattatagactagaattttgcaggtattttcctgatggtatcgatgtttactttgacaacgttg |
37159155 |
T |
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| Q |
203 |
gtggtaaaatgctcgaatctgtacttaacc |
232 |
Q |
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| T |
37159154 |
gtggtgaaatgcttgaagctgtacttaacc |
37159125 |
T |
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