View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4778_low_44 (Length: 228)

Name: NF4778_low_44
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4778_low_44
NF4778_low_44
[»] chr4 (3 HSPs)
chr4 (119-212)||(19079115-19079208)
chr4 (119-212)||(19077390-19077483)
chr4 (37-85)||(19077308-19077356)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 19079115 - 19079208
Alignment:
Q  119 ggatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcaaaatttcgtagaagacgttaacttatatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19079115 ggatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcaaaatttcgtagaagacgttaacttatatt 19079208  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 19077390 - 19077483
Alignment:
Q  119 ggatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcaaaatttcgtagaagacgttaacttatatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19077390 ggatatcctatgccaagattattatggaatcattggagagattatcatgggagattgattgatcagaatttcgtagaagacgttaacttatatt 19077483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 19077308 - 19077356
Alignment:
Q  37 atatccaatgagtttaggcgtagaagctgcaattgattaacctaaggtg 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19077308 atatccaatgagtttaggcgtagaagctgcaattgattaacctaaggtg 19077356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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