View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4778_low_6 (Length: 464)
Name: NF4778_low_6
Description: NF4778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4778_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 464
Target Start/End: Original strand, 8792026 - 8792476
Alignment:
| Q |
12 |
gagcagagaacaagtaaacgacaaaggagagaaaatgtacattcaaaccagaatggctcaatatgcagaagagttgtgggaattactgaagaaagacaac |
111 |
Q |
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| T |
8792026 |
gagcagagaacaagtaaacgacaaaggagagaaaatgtacattcaaaccagaatggctcaatatgcagaagagttgtgggaattactgaagaaagacaac |
8792125 |
T |
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| Q |
112 |
acttttgtttacatgtgtggactgaaaggaatggaaaagggaattgatgacataatggtttcactcgctgccaaagacggtaagaaaaaca-tttgaatt |
210 |
Q |
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| T |
8792126 |
acttttgtttacatgtgtggactgaaaggaatggaaaagggaattgatgacataatggtttcactcgctgccaaagacggtaagaaaaacattttgaata |
8792225 |
T |
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| Q |
211 |
tttattacatgaagcatagagggggttttggatagctcaactggtttcagctaatggttagaaggattgaattcaaaccttgaagaaggagaaaatacta |
310 |
Q |
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| T |
8792226 |
tttattacatgaagcatagaggggggtttggatagctcaactg--ttgagctaatggttagaaggattgaattcaaaccttgaagaaggaaaaaatacta |
8792323 |
T |
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| Q |
311 |
acatctgtctatcaaannnnnnnattcaagaatcagagaaactatagtcatcatgttgtgtttgttatgtgttgtaggtattgattggattgagtacaag |
410 |
Q |
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| T |
8792324 |
acatctgtctatcaaa-ttttttattcaagaatcagagaaactatagtcatcatgttgtgtttgttatgtgttgtaggtattgattggattgagtacaag |
8792422 |
T |
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| Q |
411 |
agatcgctgaagaaggcagagcaatggaatgttgaagtctattgatttattttc |
464 |
Q |
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| T |
8792423 |
agatcgctgaagaaggcagagcaatggaatgttgaagtctattgatttattttc |
8792476 |
T |
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